Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0353
         (721 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50790.1 68414.m05712 hypothetical protein                          31   0.58 
At5g05690.1 68418.m00626 cytochrome P450 90A1 (CYP90A1) (CYP90) ...    29   2.3  
At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc f...    29   3.1  
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel...    29   4.1  
At5g48010.1 68418.m05933 pentacyclic triterpene synthase, putati...    27   9.5  

>At1g50790.1 68414.m05712 hypothetical protein
          Length = 812

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +2

Query: 8   NVLLRKSPNFGQKSVLLKNIPAVHNV--NSQRDGHRWFPDPDFVKQFEGPVMYPDEST 175
           N+LL+  P     + L +       +  NS+ DG  W P    VK ++ P  YP+++T
Sbjct: 286 NLLLKGEPRLALWNDLKQRTSNAKRILNNSKIDGFEWCPYTKTVKNWDFPQFYPEKAT 343


>At5g05690.1 68418.m00626 cytochrome P450 90A1 (CYP90A1) (CYP90)
           (CPD) identical to Cytochrome P450 90A1 (SP:Q42569)
           [Arabidopsis thaliana]
          Length = 472

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 168 SSGYMTGPSNCFTKSGSGNQRCP 100
           S+   TGPSN FT  G G + CP
Sbjct: 397 SNSVTTGPSNVFTPFGGGPRLCP 419


>At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc
           finger (C3HC4-type RING finger) family protein (BRCA1)
           contains Pfam profiles PF00533: BRCA1 C Terminus (BRCT)
           domain, PF00097: Zinc finger, C3HC4 type (RING finger),
           PF01535: PPR repeat; identical to cDNA BRCA1 GI:28372473
          Length = 1276

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
 Frame = +3

Query: 324 SRSSHRSPAPWY*KTDRIQDIHPSPAVLRPSGLRVHDVQRAVLQSGRREAAEHRCSSAGQ 503
           SR    S    Y KT  I    P P V++PS      VQ  +LQ+   E+      S   
Sbjct: 453 SRKGRASKRNEYGKTKEIDVDAPGPIVMKPSSQTKKRVQ--LLQNLSAESLTKPTESVET 510

Query: 504 VHRTLFAEITRLLNHIMAVGTH-ALDV-GALTPFFWLFEE 617
             +    + T   N ++ +  H +L+  G L+PFFWL +E
Sbjct: 511 AEKP--KDYTE--NTVIRLDEHPSLNKEGNLSPFFWLRDE 546


>At3g19430.1 68416.m02464 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein [Picea glauca] GI:1350543
          Length = 559

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = -1

Query: 460 PDCSTARCTSWTRSPDGRSTAGLGCMSCIRSVFQYHGAGDLCE 332
           PDCS AR T    S +GRS   L  MSC   +    G G +C+
Sbjct: 519 PDCSAARFTGNGDSNNGRSKLELPEMSCASGL---GGKGVVCK 558


>At5g48010.1 68418.m05933 pentacyclic triterpene synthase, putative
           similar to pentacyclic triterpene synthase [gi:6650207]
           [PMID: 11247608] Contains Pfam domain PF00432:
           Prenyltransferase and squalene oxidase repeat
          Length = 758

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = -2

Query: 390 GVCLVFDQFFST----TVQETYVRICCTDCLSVQFQYETQHPVSGW 265
           GVC ++  FF+        +TY   C     +V+F  +TQ+P  GW
Sbjct: 611 GVCFIYGTFFAVRGLVAAGKTYSN-CEAIRKAVRFLLDTQNPEGGW 655


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,052,249
Number of Sequences: 28952
Number of extensions: 336109
Number of successful extensions: 895
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)