Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0352
(734 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub... 29 0.91
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 28 1.2
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 28 1.6
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 28 1.6
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 27 2.1
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.7
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 26 4.8
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 26 4.8
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p... 26 6.4
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 26 6.4
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 6.4
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 6.4
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 25 8.5
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 25 8.5
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 25 8.5
>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 28.7 bits (61), Expect = 0.91
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 104 SEIIKSEGACPAPEKP-ASSDENVQFPPLPEPTDEDFQDDLNEEE 235
SE+ KS A PAP+KP + PP P+P + D L +
Sbjct: 8 SEVEKSSSASPAPQKPMIRVSKQWVVPPRPKPGRKPALDALGRRK 52
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 512 YCRWCGQGGQVFCCSDCPHVF 574
YC CG G CC CP F
Sbjct: 119 YCSACGGRGLFICCEGCPCSF 139
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -3
Query: 507 QIHHHLSQTLHCCKRCDMSDTLVFVVKDESSHEINYVTK 391
Q+ HH+ L+ CKR D L+ ++ +S +++++TK
Sbjct: 595 QLQHHILNYLNDCKRLQDMDKLIPCIEYQSL-DLDFITK 632
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 107 EIIKSEGACPAPEKPASSDENVQFPPLPEPTDEDFQDDLNEEEK 238
EI+K+ P EKPA + N PL D+D +DD+ E+
Sbjct: 356 EILKNWS--PGLEKPAKPEVNFNNLPLEIVNDDDSEDDIYAAEE 397
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 27.5 bits (58), Expect = 2.1
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +2
Query: 512 YCRWCGQGGQVFCCSDCPHVF 574
YC C G CC CP+ F
Sbjct: 265 YCSACHGPGNFLCCETCPNSF 285
>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 26.6 bits (56), Expect = 3.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 170 VQFPPLPEPTDEDFQDDLNEEEKEYIKTNLRVSNSSLKS 286
V PP+P+ D LN +K+Y T+L NS S
Sbjct: 77 VALPPIPKGAPNFLADVLNLLKKKYYATDLSFVNSPADS 115
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 26.2 bits (55), Expect = 4.8
Identities = 21/75 (28%), Positives = 35/75 (46%)
Frame = +2
Query: 38 LSKYKHFYILLMRIPNDLGTTMSEIIKSEGACPAPEKPASSDENVQFPPLPEPTDEDFQD 217
L Y F ++L + D+ + I K+ + P + D N+ EP ++F D
Sbjct: 420 LRGYNIFGLMLKKFSIDIEFILRSI-KTMLSWPRLTRNKIQDSNI------EPVVQEFCD 472
Query: 218 DLNEEEKEYIKTNLR 262
NEE K++ KT L+
Sbjct: 473 HENEEVKDHAKTLLK 487
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -2
Query: 679 VFKHSGLHLKHFQSSTHLISNIFDCPKFRLIHFAQKNMRTVRTTEYLSSLATPS 518
+ HS + K S FD K RL HFA N+ ++ + SSL+ S
Sbjct: 129 ILYHSEISAKKNASPMEFGDASFDLEKQRL-HFANSNLHSIESERNESSLSLDS 181
>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = +2
Query: 29 LQTLSKYKHFY--ILLMRIPNDLG 94
++T KYKHFY I ++ DLG
Sbjct: 586 IETFEKYKHFYHKICASQVEKDLG 609
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 137 APEKPASSDENVQFPPLPEPTDEDFQDDLNE 229
AP S++ + PP P P DF D NE
Sbjct: 294 APSSGDSANGGLPPPPPPPPPSNDFWKDSNE 324
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 501 HHHLSQTLHCCKRCDMSDTLVFVVKDESSHEIN 403
+H+ ++ + CC RC S VV D +S +N
Sbjct: 458 YHNFAKNV-CCLRCGASRATAAVVADHASGPVN 489
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 25.8 bits (54), Expect = 6.4
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +2
Query: 71 MRIPNDLGTTMSEIIKSEGACPAP-EKPASSDENVQFPPLPEPTDEDFQDDLNEEEKEYI 247
++ P DLGT SE+ A P EK +SS + +F T E+ ++ ++++++ +
Sbjct: 698 IKYPMDLGT--SEMKNVGRAYPEILEKLSSSSGSDEFLETSSRTSENTKEKIDKDDEGFA 755
Query: 248 KTNLRVSNSSLKSCENYFRNI 310
TN+ + +YF ++
Sbjct: 756 ITNISSVHKMPSFVLSYFSDL 776
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 25.4 bits (53), Expect = 8.5
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +2
Query: 101 MSEIIKSEGACPAPEKPASSDENVQFPPLPEPTDEDFQDDLNEEEK--EYIKTNLRVSNS 274
MSE + S+ P + S D + D+DFQD++ ++ + T LR S
Sbjct: 545 MSENLSSKEKTAVPPRQKSRDIIASVTDVISSLDKDFQDEMAAKQSMIDSAYTQLRESTK 604
Query: 275 SL 280
L
Sbjct: 605 KL 606
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 25.4 bits (53), Expect = 8.5
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 41 SKYKHFYILLMRIPNDLGTTMSEIIKSEGACPAPEKPASSDENVQFPPLP 190
S ++H+ L R+ + + + +I CP P PA N+Q+ LP
Sbjct: 583 SMFEHYRKLARRLISHY-LSKTTLISLLVGCPVPAIPAEQLYNIQYAMLP 631
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 197 TDEDFQDDLNEEEKEYIKTNLRVSNSSLKSCENYFRN 307
++ DF+ D+ EEE + + N VS K + F N
Sbjct: 390 SESDFEPDIIEEEDDSDEFNPSVSRKKAKLTSSQFSN 426
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,767,501
Number of Sequences: 5004
Number of extensions: 55332
Number of successful extensions: 192
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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