Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0352
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    26   0.42 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   0.98 
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    24   1.7  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   3.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   6.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   6.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.1  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +3

Query: 360 HCTACDRHLGSSSRNLSRVKIHPLLRTLVCQTC 458
           HC+ CDR     +     +++H   R   C+ C
Sbjct: 39  HCSHCDRQFVQVANLRRHLRVHTGERPYACELC 71


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 345 TSQRLH-CTACDRHLGSSSRNLSRVKIHPLLRTLVCQTC 458
           T +R H CT C +    S + +  ++ H   +  VC+ C
Sbjct: 171 TGERPHKCTVCSKTFIQSGQLVIHMRTHTGEKPYVCKAC 209



 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
 Frame = +3

Query: 363 CTACDRHLGSSSRNLSRVKIHPLLRTLVCQTC-HIFYNSGE 482
           C  C+R    S +    ++IH   R   C  C   F  SG+
Sbjct: 150 CDVCERAFEHSGKLHRHMRIHTGERPHKCTVCSKTFIQSGQ 190


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 137 APEKPASSDENVQFPPLPEPTDED 208
           A   P S+   V FPP P P +ED
Sbjct: 38  AMRDPRSNRGPVLFPPGPPPNNED 61


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = -2

Query: 586 HFAQ--KNMRTVRTTEYLSSLATPSTV 512
           H A+  KN   VR T Y+ +LAT   +
Sbjct: 157 HLAETPKNTSAVRYTHYIGTLATNDNI 183


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 625 ISNIFDCPKFRLIHFAQKNMRTVRTTEYLSSLA 527
           +SN    P+F+++   Q+ M    TT   S LA
Sbjct: 179 VSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLA 211


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -3

Query: 534 PWPHHRQ*SQIHHHLSQTLH 475
           P PHH      H H+  T H
Sbjct: 412 PGPHHHTMGHGHSHIHATPH 431


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 625 ISNIFDCPKFRLIHFAQKNMRTVRTTEYLSSLA 527
           +SN    P+F+++   Q+ M    TT   S LA
Sbjct: 118 VSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLA 150


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
 Frame = +3

Query: 537 DKYSV---VLTVLMFFCAKCIKRNFGQSKILE-IKCVDDWK--CFKCNPECLKTPACCML 698
           D Y+V    L  LMFF    I   FG ++  + I+ +  +   C+      + TPA C+ 
Sbjct: 446 DSYAVSGFCLLFLMFFECIAISWAFGVNRFYDGIRDMIGYYPCCWWKICWTITTPAICVG 505

Query: 699 GLCFNIVK 722
              FNI+K
Sbjct: 506 VFTFNIIK 513


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
 Frame = +3

Query: 537 DKYSV---VLTVLMFFCAKCIKRNFGQSKILE-IKCVDDWK--CFKCNPECLKTPACCML 698
           D Y+V    L  LMFF    I   FG ++  + I+ +  +   C+      + TPA C+ 
Sbjct: 499 DSYAVSGFCLLFLMFFECIAISWAFGVNRFYDGIRDMIGYYPCCWWKICWTITTPAICVG 558

Query: 699 GLCFNIVK 722
              FNI+K
Sbjct: 559 VFTFNIIK 566


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,233
Number of Sequences: 438
Number of extensions: 3733
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)