Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0352
(734 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g08600.1 68414.m00953 SNF2 domain-containing protein / helica... 43 2e-04
At3g14980.1 68416.m01894 PHD finger transcription factor, putati... 34 0.11
At1g32190.1 68414.m03959 expressed protein 33 0.15
At5g36740.1 68418.m04402 PHD finger family protein 32 0.34
At5g36670.1 68418.m04388 PHD finger family protein 32 0.34
At4g14920.1 68417.m02292 PHD finger transcription factor, putative 32 0.45
At2g28440.1 68415.m03455 proline-rich family protein contains pr... 31 0.79
At1g67780.1 68414.m07734 hypothetical protein 31 0.79
At1g05380.1 68414.m00546 PHD finger transcription factor, putative 31 0.79
At5g38690.1 68418.m04678 expressed protein 31 1.0
At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containi... 31 1.0
At1g67270.1 68414.m07656 hypothetical protein 31 1.0
At5g22760.1 68418.m02658 PHD finger family protein contains Pfam... 30 1.4
At3g11650.1 68416.m01428 harpin-induced family protein / HIN1 fa... 30 1.4
At5g35210.2 68418.m04175 peptidase M50 family protein / sterol-r... 30 1.8
At5g35210.1 68418.m04174 peptidase M50 family protein / sterol-r... 30 1.8
At4g32820.1 68417.m04668 expressed protein ; expression supporte... 30 1.8
At3g53680.1 68416.m05928 PHD finger transcription factor, putati... 29 2.4
At2g37520.1 68415.m04601 PHD finger family protein contains Pfam... 29 2.4
At3g11720.1 68416.m01437 expressed protein 29 3.2
At1g63240.1 68414.m07148 expressed protein 29 3.2
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ... 29 3.2
At1g23040.1 68414.m02878 hydroxyproline-rich glycoprotein family... 29 3.2
At1g20380.1 68414.m02542 prolyl oligopeptidase, putative / proly... 29 3.2
At2g38410.1 68415.m04718 VHS domain-containing protein / GAT dom... 29 4.2
At2g16190.1 68415.m01855 hypothetical protein 29 4.2
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ... 29 4.2
At5g42280.1 68418.m05146 DC1 domain-containing protein contains ... 28 5.6
At5g17960.1 68418.m02106 DC1 domain-containing protein contains ... 28 5.6
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 28 7.4
At1g02040.1 68414.m00124 zinc finger (C2H2 type) family protein ... 28 7.4
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 23 8.6
At3g04590.2 68416.m00489 DNA-binding family protein contains a A... 27 9.8
At3g04590.1 68416.m00488 DNA-binding family protein contains a A... 27 9.8
>At1g08600.1 68414.m00953 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|P46100
Transcriptional regulator ATRX {Homo sapiens}; contains
PFam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain;
non-consensus GC donor splice site at exon boundary
28614
Length = 1457
Score = 43.2 bits (97), Expect = 2e-04
Identities = 30/106 (28%), Positives = 40/106 (37%)
Frame = +3
Query: 348 SQRLHCTACDRHLGSSSRNLSRVKIHPLLRTLVCQTCHIFYNSGEFEKGDDGSDFTVDGV 527
+ CTAC++ V HPLL +VC C K DD + +
Sbjct: 447 ANNFRCTACNKVA-------VEVHSHPLLEVIVCMDCKRSIED-RVSKVDDSLERHCEWC 498
Query: 528 AKEDKYSVVLTVLMFFCAKCIKRNFGQSKILEIKCVDDWKCFKCNP 665
T FCA CIKRN G+ + E + W C C+P
Sbjct: 499 GHIADLIDCRTCEKLFCASCIKRNIGEEYMSEAQS-SGWDCCCCSP 543
>At3g14980.1 68416.m01894 PHD finger transcription factor, putative
contains Pfam profile: PF00628 PHD-finger
Length = 1189
Score = 33.9 bits (74), Expect = 0.11
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 515 CRWCGQGGQVFCCSDCPHVF 574
C CG GG++ CC +CP F
Sbjct: 729 CGVCGDGGELICCDNCPSTF 748
>At1g32190.1 68414.m03959 expressed protein
Length = 422
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 570 FFCAKCIKRNFGQSKILEIKCVDDWKCFKC-NPECLKTPACC 692
F C+ C FG+ K + C WKC KC + EC ++ CC
Sbjct: 357 FKCSSC----FGKPKCPKCSC---WKCLKCPDTECCRSSCCC 391
>At5g36740.1 68418.m04402 PHD finger family protein
Length = 1179
Score = 32.3 bits (70), Expect = 0.34
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 515 CRWCGQGGQVFCCSDCPHVF 574
C CG GG + CC CP F
Sbjct: 653 CGICGDGGDLICCDGCPSTF 672
>At5g36670.1 68418.m04388 PHD finger family protein
Length = 1193
Score = 32.3 bits (70), Expect = 0.34
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 515 CRWCGQGGQVFCCSDCPHVF 574
C CG GG + CC CP F
Sbjct: 653 CGICGDGGDLICCDGCPSTF 672
>At4g14920.1 68417.m02292 PHD finger transcription factor, putative
Length = 1055
Score = 31.9 bits (69), Expect = 0.45
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 515 CRWCGQGGQVFCCSDCPHVF 574
C CG GG + CC CP F
Sbjct: 655 CGICGDGGDLVCCDGCPSTF 674
>At2g28440.1 68415.m03455 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains similarity to vegetative cell wall protein gp1
[Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420; +
Length = 268
Score = 31.1 bits (67), Expect = 0.79
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +2
Query: 134 PAPEKPASSDENVQFPPLPEPTDEDFQDDLNEEEKEY 244
P PE P SS + P+P P+D+D DD E E EY
Sbjct: 151 PQPESP-SSPSYPEPAPVPAPSDDDSDDD-PEPETEY 185
>At1g67780.1 68414.m07734 hypothetical protein
Length = 515
Score = 31.1 bits (67), Expect = 0.79
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 573 FCAKCIKRNFGQSKILEIKCVDDWKCFKCNPEC 671
FC KC+ +G++ E+ +DDW C +C C
Sbjct: 62 FCHKCLINRYGENAE-EVAKLDDWICPQCRGIC 93
>At1g05380.1 68414.m00546 PHD finger transcription factor, putative
Length = 600
Score = 31.1 bits (67), Expect = 0.79
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 515 CRWCGQGGQVFCCSDCPHVF 574
C CG GG + CC CP +
Sbjct: 90 CGICGDGGDLICCDGCPSTY 109
>At5g38690.1 68418.m04678 expressed protein
Length = 572
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 576 CAKCIKRNFGQSKILEIKCVDDWKCFKCNPEC 671
C KCI +G++ E+ DW C KC C
Sbjct: 60 CTKCILNRYGENA-QEVALKKDWICPKCRGNC 90
>At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 633
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/75 (28%), Positives = 36/75 (48%)
Frame = +2
Query: 65 LLMRIPNDLGTTMSEIIKSEGACPAPEKPASSDENVQFPPLPEPTDEDFQDDLNEEEKEY 244
+ +R P L + + ++ + + PAP S DE+++FP D + N+ E Y
Sbjct: 1 MALRFPPRLLSQL-KLSRRLNSLPAPVSEDSEDESLKFP----SNDLLLRTSSNDLEGSY 55
Query: 245 IKTNLRVSNSSLKSC 289
I + R N+ LK C
Sbjct: 56 IPADRRFYNTLLKKC 70
>At1g67270.1 68414.m07656 hypothetical protein
Length = 506
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 573 FCAKCIKRNFGQSKILEIKCVDDWKCFKCNPECL 674
FC KC+ +G++ E+ +DDW C C C+
Sbjct: 54 FCYKCLSIRYGENAE-EVAKLDDWICPLCRGICI 86
>At5g22760.1 68418.m02658 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1566
Score = 30.3 bits (65), Expect = 1.4
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 515 CRWCGQGGQVFCCSDCP 565
CR CG G + CC CP
Sbjct: 416 CRLCGMDGTLLCCDGCP 432
>At3g11650.1 68416.m01428 harpin-induced family protein / HIN1
family protein / harpin-responsive family protein /
NDR1/HIN1-like protein 2 identical to NDR1/HIN1-Like
protein 2 (GP:9502174) [Arabidopsis thaliana]; similar
to hin1 GB:CAA68848 [Nicotiana tabacum]
Length = 240
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 648 CFKCNPECLKTPACCMLGLCFNIV 719
CF C CL+ CC+L L NI+
Sbjct: 36 CFSCLGSCLRCCGCCILSLICNIL 59
>At5g35210.2 68418.m04175 peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein contains PFam PF02163:
sterol-regulatory element binding protein (SREBP) site 2
protease
Length = 1409
Score = 29.9 bits (64), Expect = 1.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 515 CRWCGQGGQVFCCSDCP 565
CR CG G + CC CP
Sbjct: 414 CRICGMDGTLLCCDGCP 430
>At5g35210.1 68418.m04174 peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein contains PFam PF02163:
sterol-regulatory element binding protein (SREBP) site 2
protease
Length = 1576
Score = 29.9 bits (64), Expect = 1.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 515 CRWCGQGGQVFCCSDCP 565
CR CG G + CC CP
Sbjct: 414 CRICGMDGTLLCCDGCP 430
>At4g32820.1 68417.m04668 expressed protein ; expression supported by
MPSS
Length = 1817
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 245 IKTNLRVSNSSLKSCENYFR 304
++ NL ++NS LKSC N+FR
Sbjct: 1669 VEGNLEIANSLLKSCYNFFR 1688
>At3g53680.1 68416.m05928 PHD finger transcription factor, putative
predicted proteins, Arabidopsis thaliana
Length = 839
Score = 29.5 bits (63), Expect = 2.4
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 515 CRWCGQGGQVFCCSDCPHVF 574
C CG GG + C+ CP F
Sbjct: 489 CSICGNGGDLLLCAGCPQAF 508
>At2g37520.1 68415.m04601 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 854
Score = 29.5 bits (63), Expect = 2.4
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 515 CRWCGQGGQVFCCSDCPHVF 574
C CG GG + C+ CP F
Sbjct: 496 CSICGDGGDLLLCAGCPQAF 515
>At3g11720.1 68416.m01437 expressed protein
Length = 542
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 185 LPEPTDEDFQDDLNEEEKEYIKTNLRVSNSSLKSCENYFRNIKIMFCFRLE 337
+PE +E+ DDL EE K++ S+SS S E+ +N K FC E
Sbjct: 348 VPEIEEEECVDDLKEEN----KSSPSSSSSSSSSSEDEDKNGKTRFCISPE 394
>At1g63240.1 68414.m07148 expressed protein
Length = 548
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Frame = +2
Query: 149 PASSDENVQFPPLPEPTDEDFQDDLNEE-----EKEYIKTNLRVSNSSLKSCEN 295
P S+D N+ P PT D + LNEE +K ++V++S++ SC +
Sbjct: 483 PGSADSNLPLPDFGLPTFSDIKISLNEEPAFKKKKSPDPPCVQVASSNIPSCSS 536
>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 725
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 312 KLCFVLDLNTITSQRLH-CTACDRHLGSSSRNLSRVKIHPL 431
K C L + SQR + C CD L + +L R K HPL
Sbjct: 402 KFCEACTLPVMISQRFYGCMQCDFVLDETCASLPRKKNHPL 442
>At1g23040.1 68414.m02878 hydroxyproline-rich glycoprotein family
protein contains proline-rich domains,
INTERPRO:IPR000694
Length = 144
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = +3
Query: 537 DKYSVVLTVLMFFCAKCIKRNFGQSKILEIKCVDDWKCFKCNPECLKTP 683
D V+ + + C I + LE + +D+ KC+P C++ P
Sbjct: 11 DVIFTVMMIALLTCPTLINGSSSSDASLEARKLDEVDPIKCSPSCIQNP 59
>At1g20380.1 68414.m02542 prolyl oligopeptidase, putative / prolyl
endopeptidase, putative / post-proline cleaving enzyme,
putative similar to SP|P48147 Prolyl endopeptidase (EC
3.4.21.26) (Post-proline cleaving enzyme) {Homo
sapiens}; contains Pfam profiles PF00326: prolyl
oligopeptidase family, PF02897: Prolyl oligopeptidase,
N-terminal beta-propeller domain
Length = 731
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +2
Query: 212 QDDLNEEEKEYIKTNLRVSNSSLKSCE 292
+D EE KE+++ +++S+S LKSCE
Sbjct: 39 EDPDAEEVKEFVEKQVQLSDSVLKSCE 65
>At2g38410.1 68415.m04718 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate HRS
isoform 2 [Homo sapiens] GI:9022389; contains Pfam
profiles PF00790: VHS domain, PF03127: GAT domain
Length = 671
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 134 PAPEKPASSDENVQFPPLPEPTDEDF 211
P+P PA SD+N P P+P + +
Sbjct: 453 PSPPPPAGSDQNTHIYPQPQPRFDSY 478
>At2g16190.1 68415.m01855 hypothetical protein
Length = 303
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = -3
Query: 492 LSQTLHCCKRCDMSDTLVFVVKDESSHEINYVTKNRDD 379
+S +HC K CD +DT+ + ++++ S Y+ N+++
Sbjct: 175 ISGQVHC-KTCDRTDTVEYNLEEKFSELYGYIKVNKEE 211
>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 661
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 312 KLCFVLDLNTITSQRLH-CTACDRHLGSSSRNLSRVKIHPL 431
K C L + SQR + C CD L + +L R K HPL
Sbjct: 363 KFCEACTLPVMISQRYYGCMQCDFVLDETCASLPRKKNHPL 403
>At5g42280.1 68418.m05146 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 694
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 312 KLCFVLDLNTITSQRLH-CTACDRHLGSSSRNLSRVKIHPL 431
K+C L + SQR + C CD L + L R K HPL
Sbjct: 408 KVCEACTLPVMISQRYYGCMKCDFVLDEACAFLPRKKYHPL 448
>At5g17960.1 68418.m02106 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 599
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Frame = +3
Query: 291 RITSET*KLCFVLDLNTITSQR---LHCTACDRHLGSSSRNLSRVKIHP 428
+++ T CF TS R HCT CD N+ R +HP
Sbjct: 31 KLSKNTKSNCFTCGKQVSTSSRGFHYHCTICDVDFHEECVNIPRKILHP 79
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385:
'chromo' (CHRromatin Organization MOdifier)
Length = 2228
Score = 27.9 bits (59), Expect = 7.4
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = +2
Query: 515 CRWCGQGGQVFCCSDCPHVF 574
C C GG + CC CP +
Sbjct: 64 CVICDLGGDLLCCDSCPRTY 83
>At1g02040.1 68414.m00124 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 324
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = -3
Query: 564 GQSEQQNTC--PPWPHHRQ*SQIHHHLS 487
GQ ++ N PPW R S HHHL+
Sbjct: 75 GQHDEDNMSRRPPWKRERSMSTQHHHLN 102
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 23.0 bits (47), Expect(2) = 8.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 179 PPLPEPTDEDFQDDLNEEEK 238
P LPE + D ++ +EEEK
Sbjct: 4921 PALPEQVNTDMREGESEEEK 4940
Score = 22.6 bits (46), Expect(2) = 8.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 215 DDLNEEEKEYIKTNLRVSNS 274
DDLN E K +++ +SNS
Sbjct: 4954 DDLNPENKPAVQSKPSISNS 4973
>At3g04590.2 68416.m00489 DNA-binding family protein contains a AT
hook motif (DNA binding motifs with a preference for A/T
rich regions), Pfam:PF02178
Length = 411
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 579 HKKT*GQSEQQNTCPPWPHHRQ*SQIHHHLSQTL 478
H++ Q +QQ P+ HH+ Q HHHL T+
Sbjct: 19 HQQQQQQQQQQRLTSPYFHHQL--QHHHHLPTTV 50
>At3g04590.1 68416.m00488 DNA-binding family protein contains a AT
hook motif (DNA binding motifs with a preference for A/T
rich regions), Pfam:PF02178
Length = 308
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 579 HKKT*GQSEQQNTCPPWPHHRQ*SQIHHHLSQTL 478
H++ Q +QQ P+ HH+ Q HHHL T+
Sbjct: 19 HQQQQQQQQQQRLTSPYFHHQL--QHHHHLPTTV 50
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,048,843
Number of Sequences: 28952
Number of extensions: 284365
Number of successful extensions: 1236
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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