Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0351
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       27   1.6  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   2.1  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   2.8  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   4.9  
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    25   8.6  

>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = -2

Query: 336 MYIVFYLVHIR*IQCIVIFFNFIY--ILKSFLAFNI*TILQTFI*RIVHVLSKLYYVPF- 166
           + IV   ++ R ++C     + I+      +  F I TI+Q++  ++  + ++LY +PF 
Sbjct: 39  LLIVVITLYRRIVECCASLCSLIFSKYYLHYKTFRILTIIQSWSDKVSVLPNRLYCLPFC 98

Query: 165 NCFLTF 148
           N F+ F
Sbjct: 99  NAFIEF 104


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -2

Query: 207 RIVHVLSKLYYVPFNCFLTFSH*CGWVYFKLIIHISFLS 91
           R+  +LSKLY VPFN  L F    G    + +IH   L+
Sbjct: 608 RLRGLLSKLYVVPFNRNLLFKRLMG---IRFVIHYRSLA 643


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 143 ISAVGYILNS*FIFHFCQIMSYPIIFVFVISSYYICTYCI 24
           IS  G  LN+ +    C++ SY   F+ V++S ++ + CI
Sbjct: 133 ISGTGPSLNASYK-SLCKLYSYENSFIVVLNSIFVVSSCI 171


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 388  MKKKTNTYKNSLQHLRYYVYSILFSTYSV 302
            +K+K  + K+ L+H   Y+YS  F  Y +
Sbjct: 1802 LKRKFRSIKDFLKHTVSYLYSYYFEDYEL 1830


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 467 MHILFCVVFYIYFVCSVIYFSL 402
           +H +  V++ I  +C  IYFSL
Sbjct: 360 LHPVHTVIYTITLICITIYFSL 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,921,263
Number of Sequences: 5004
Number of extensions: 36812
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)