Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0351
         (508 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_52529| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)                 28   3.8  
SB_50241| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  

>SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 966

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = -1

Query: 478 IKKTCIFYFVSCFIYILSVV*FTSVCNYSNMKKKTNTYKNSLQHLRYYVYSILFSTYSVN 299
           +  T I   +SC +++L+VV  T VC      +K  +++N    L     S+   T ++ 
Sbjct: 625 LASTVIRLTLSCLVFLLNVVGNTMVCIVVKRNRKLRSFRNYYYGLFLVNLSVADLTVAII 684

Query: 298 SMYSNIL*FY 269
            M   IL FY
Sbjct: 685 CM-PFILLFY 693


>SB_52529| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
          Length = 415

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
 Frame = -1

Query: 463 IFYFVSCFIYILSVV*FTSVCNYSNMKKKTNTYKNSLQHLRYYVYSI-LFSTYSVNSMYS 287
           + +FVSCF+ + S++ F SV  +  +K+  + +K +   L+Y V +  LF+  SV S  S
Sbjct: 245 VTFFVSCFVSLFSLL-FISVDRFLAVKRPLH-HKATNGWLKYAVAATWLFALLSVESAMS 302


>SB_50241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 403 CNYSNMKKKTNTYKNSLQHLRYYVYSILFSTY 308
           C+     +K +  K SL +L  Y Y ILF+TY
Sbjct: 37  CSDVPRDEKLDLRKRSLYYLERYFYFILFNTY 68


>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
 Frame = -3

Query: 245 HLTYELFFKHSFEE*FMC*VNYIMYHLIVF*HF-LISAVGYILNS*FIFH---FCQI-MS 81
           H+ ++      F    +C VNY+ YH+I   H  L+  V Y+ +  ++FH    C +   
Sbjct: 77  HVIWQFHVSLLFHVSSLCHVNYV-YHVIWLFHVSLLCHVIYMYHVIWLFHVSLLCHVNYM 135

Query: 80  YPIIFVFVIS 51
           Y +I++F +S
Sbjct: 136 YHVIWLFHVS 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,703,842
Number of Sequences: 59808
Number of extensions: 218419
Number of successful extensions: 432
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)