Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0351
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70856-1|AAB09165.1|  327|Caenorhabditis elegans Hypothetical pr...    30   0.84 
Z81508-6|CAB04147.1|  338|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z74034-2|CAE17843.1|  323|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z93379-7|CAD54132.1|  188|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AY519853-1|AAR89634.1|  545|Caenorhabditis elegans acetylcholine...    28   3.4  
AL032630-1|CAA21558.1|  366|Caenorhabditis elegans Hypothetical ...    28   3.4  
AF067943-10|AAC17666.3|  545|Caenorhabditis elegans Acetylcholin...    28   3.4  
U39644-1|AAA80359.2|  393|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AL022716-2|CAA18772.1|  373|Caenorhabditis elegans Hypothetical ...    27   5.9  
AL022716-1|CAA18770.1|  371|Caenorhabditis elegans Hypothetical ...    27   5.9  
Z66524-1|CAA91420.2|  500|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z37092-1|CAA85452.1|  183|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AL110484-27|CAI46626.1|  397|Caenorhabditis elegans Hypothetical...    27   7.8  
AF016683-2|AAB66194.1|  709|Caenorhabditis elegans Hypothetical ...    27   7.8  
AC006674-12|AAO38617.1|  357|Caenorhabditis elegans Hypothetical...    27   7.8  
AC006674-11|AAF39936.1|  309|Caenorhabditis elegans Hypothetical...    27   7.8  

>U70856-1|AAB09165.1|  327|Caenorhabditis elegans Hypothetical
           protein F57F4.2 protein.
          Length = 327

 Score = 30.3 bits (65), Expect = 0.84
 Identities = 17/53 (32%), Positives = 30/53 (56%)
 Frame = -2

Query: 309 IR*IQCIVIFFNFIYILKSFLAFNI*TILQTFI*RIVHVLSKLYYVPFNCFLT 151
           +R + C++ FF  ++ +K  L F +  I Q++I      L K  Y+ +NC+LT
Sbjct: 243 LRNLMCMLHFFIVMHYIK-ILKFVLIAIFQSYI----QFLKKTKYILYNCYLT 290


>Z81508-6|CAB04147.1|  338|Caenorhabditis elegans Hypothetical
           protein F20E11.10 protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -1

Query: 469 TCIFYFVSCFIYILSVV*--FTSVCNYSNMKKKTNTYKNSLQHLRYYVYSILFS 314
           T ++ F   FI I+ +    F  +C +S  K K  ++K+      Y++Y+ +FS
Sbjct: 103 TAVYCFGLMFIAIVVIFENRFRVICTFS-WKPKWESFKSMFMPFHYFIYTFMFS 155


>Z74034-2|CAE17843.1|  323|Caenorhabditis elegans Hypothetical
           protein F43A11.4 protein.
          Length = 323

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/50 (32%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
 Frame = -2

Query: 291 IVIFFNFIYILKSFLAFNI*TILQTFI*RIVHVLSKL-YYVPFNCFLTFS 145
           I +F++ ++ +K  + F + T++  F+ RIV ++ +L +Y+P  CF +FS
Sbjct: 116 IPMFYSTLFGVK--ITFILTTLI--FVYRIVKIIMELIHYIPLQCFSSFS 161


>Z93379-7|CAD54132.1|  188|Caenorhabditis elegans Hypothetical
           protein F21H7.12 protein.
          Length = 188

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = -1

Query: 508 KVFHS-YCCNFIKKTCIFYF--VSCFIYILSVV*FTSVCNYSNMKKKTNTYKNSLQHL 344
           ++ HS Y C+ I    +F F  V+C +Y+ S+V    +   S + K     K+SL  +
Sbjct: 130 RLIHSDYQCSIIVPISVFVFSIVTCIVYLFSIVGSIYIWCVSGLTKLDRWTKSSLHQV 187


>AY519853-1|AAR89634.1|  545|Caenorhabditis elegans acetylcholine
           receptor (62.5 kD)(acr-23) protein.
          Length = 545

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 493 YCCNFIKKTCIFYFVSCFIYILSVV*FTSVCNYSN 389
           Y  N I  T +  F+S   +  SV  FT+ CN S+
Sbjct: 245 YVLNLIAPTAVITFISIIGFFTSVNPFTNFCNVSS 279


>AL032630-1|CAA21558.1|  366|Caenorhabditis elegans Hypothetical
           protein Y62H9A.1 protein.
          Length = 366

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 425 RQNIYKTRHKIKYACFFYEIATITMKD 505
           R N+YKT ++IKY    Y IA + + D
Sbjct: 175 RDNLYKTDNRIKYFFNEYSIAIVRVSD 201


>AF067943-10|AAC17666.3|  545|Caenorhabditis elegans Acetylcholine
           receptor protein 23 protein.
          Length = 545

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 493 YCCNFIKKTCIFYFVSCFIYILSVV*FTSVCNYSN 389
           Y  N I  T +  F+S   +  SV  FT+ CN S+
Sbjct: 245 YVLNLIAPTAVITFISIIGFFTSVNPFTNFCNVSS 279


>U39644-1|AAA80359.2|  393|Caenorhabditis elegans Hypothetical
           protein T10E10.3 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/49 (22%), Positives = 24/49 (48%)
 Frame = -2

Query: 204 IVHVLSKLYYVPFNCFLTFSH*CGWVYFKLIIHISFLSNNVISNYFCFC 58
           + H+ S   YV  N F    +   W+Y  + +  + ++ + ++N+  FC
Sbjct: 279 VSHIPSACLYVYINLFHNVLYSTRWMYTSVQVSTTVVTCSKVANFILFC 327


>AL022716-2|CAA18772.1|  373|Caenorhabditis elegans Hypothetical
           protein C24F3.1b protein.
          Length = 373

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = -1

Query: 499 HSYCCNFIKKTCIFYFVSCFIYILSVV*FTSVCNYSNMK--KKTNTYK--NSLQHLRYYV 332
           H Y    +    IF++  C+I + +VV    +   S      K +T+K   S   + + V
Sbjct: 77  HGYLSGILDLPAIFFYSVCWIVVHAVVQEYGLDKISKKTHLSKVSTFKFGESFHQMFFTV 136

Query: 331 YSILFSTYSVN 299
           YSI  + Y V+
Sbjct: 137 YSIAHAFYIVS 147


>AL022716-1|CAA18770.1|  371|Caenorhabditis elegans Hypothetical
           protein C24F3.1a protein.
          Length = 371

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = -1

Query: 499 HSYCCNFIKKTCIFYFVSCFIYILSVV*FTSVCNYSNMK--KKTNTYK--NSLQHLRYYV 332
           H Y    +    IF++  C+I + +VV    +   S      K +T+K   S   + + V
Sbjct: 77  HGYLSGILDLPAIFFYSVCWIVVHAVVQEYGLDKISKKTHLSKVSTFKFGESFHQMFFTV 136

Query: 331 YSILFSTYSVN 299
           YSI  + Y V+
Sbjct: 137 YSIAHAFYIVS 147


>Z66524-1|CAA91420.2|  500|Caenorhabditis elegans Hypothetical
           protein T13H5.4 protein.
          Length = 500

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = -1

Query: 451 VSCFIYILSVV*FTSVCNYSNMKKKTNTYKNSLQHLRYYVYSILFST---YSVNSMYSNI 281
           V    Y+L+   FT +    N  KKT  YK  +  L+ Y+ S +  T   + ++S++S +
Sbjct: 158 VDYMTYLLNFEKFTEIPK--NTTKKTGAYKEYINSLKDYLVSFMQRTRPLHDLDSVFSEV 215


>Z37092-1|CAA85452.1|  183|Caenorhabditis elegans Hypothetical
           protein F44F4.1 protein.
          Length = 183

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -2

Query: 183 LYYVPFNCFLTFSH*CGWVYFKLIIHISFL--SNNVISNYFCF 61
           L+  PF+ FL F   C + YF++++ +  L   +  ++ Y CF
Sbjct: 2   LFAPPFSHFLFFLFFCAYCYFQMLLLLPLLLFPSATLALYDCF 44


>AL110484-27|CAI46626.1|  397|Caenorhabditis elegans Hypothetical
           protein Y38E10A.28 protein.
          Length = 397

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/32 (34%), Positives = 23/32 (71%)
 Frame = +1

Query: 337 NISSVAMNFCMYLFFFSYLNNYKLK*ITLQTK 432
           N++ +A+N C+ L+F  +L+++ +   TL+TK
Sbjct: 2   NVAILALN-CVSLYFLLFLSSFAIDLYTLETK 32


>AF016683-2|AAB66194.1|  709|Caenorhabditis elegans Hypothetical
           protein K09F6.4 protein.
          Length = 709

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 463 IFYFVSCFIYILSVV*FTSVCNYSNMKKKTNTYKNS 356
           +F  + C I ++S + F  VC Y + KKK    K +
Sbjct: 650 MFIGIGCGIVLVSALIFVVVCFYKSQKKKREMDKEA 685


>AC006674-12|AAO38617.1|  357|Caenorhabditis elegans Hypothetical
           protein K12H6.6b protein.
          Length = 357

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = -3

Query: 179 IMYHLIVF*HFLISAVGYILNS*FIFHFCQIMSYPII-----FVFVISSYYICTY 30
           I+YH IV  + ++   GY+LN   +   C   S  I+      V V+S++ IC +
Sbjct: 112 ILYHCIVGRNLVLMMTGYLLND-LVDLICNERSVRIVELLFHHVVVLSAFTICLF 165


>AC006674-11|AAF39936.1|  309|Caenorhabditis elegans Hypothetical
           protein K12H6.6a protein.
          Length = 309

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = -3

Query: 179 IMYHLIVF*HFLISAVGYILNS*FIFHFCQIMSYPII-----FVFVISSYYICTY 30
           I+YH IV  + ++   GY+LN   +   C   S  I+      V V+S++ IC +
Sbjct: 112 ILYHCIVGRNLVLMMTGYLLND-LVDLICNERSVRIVELLFHHVVVLSAFTICLF 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,296,946
Number of Sequences: 27780
Number of extensions: 197111
Number of successful extensions: 588
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)