SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0351
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    24   0.79 
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   1.8  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   1.8  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    23   2.4  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    23   2.4  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    23   2.4  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    23   2.4  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    23   2.4  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    23   2.4  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    23   2.4  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   2.4  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    22   3.2  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   4.2  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    21   7.3  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   7.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.7  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 403 CNYSNMKKKTNTYKNSLQHLRY 338
           CNYSN     N YK    ++ Y
Sbjct: 311 CNYSNNYYNNNNYKKLYYNINY 332


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -1

Query: 397 YSNMKKKTNTYKNSLQHLRYYVYSILFSTYSVN 299
           YSN     N Y N+  +     Y  L+  Y +N
Sbjct: 91  YSNYNNYNNNYNNNYNNNYNNNYKKLYKNYIIN 123


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -1

Query: 397 YSNMKKKTNTYKNSLQHLRYYVYSILFSTYSVN 299
           YSN     N Y N+  +     Y  L+  Y +N
Sbjct: 91  YSNYNNYNNNYNNNYNNNYNNNYKKLYKNYIIN 123


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 397 YSNMKKKTNTYKNSLQHLRYY 335
           YSN     N Y  + + L+YY
Sbjct: 91  YSNYNNYNNNYNTNYKKLQYY 111


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 397 YSNMKKKTNTYKNSLQHLRYY 335
           YSN     N Y  + + L+YY
Sbjct: 91  YSNYNNYNNNYNTNYKKLQYY 111


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 397 YSNMKKKTNTYKNSLQHLRYY 335
           YSN     N Y  + + L+YY
Sbjct: 91  YSNYNNYNNNYNTNYKKLQYY 111


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 397 YSNMKKKTNTYKNSLQHLRYY 335
           YSN     N Y  + + L+YY
Sbjct: 91  YSNYNNYNNNYNTNYKKLQYY 111


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 397 YSNMKKKTNTYKNSLQHLRYY 335
           YSN     N Y  + + L+YY
Sbjct: 91  YSNYNNYNNNYNTNYKKLQYY 111


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 397 YSNMKKKTNTYKNSLQHLRYY 335
           YSN     N Y  + + L+YY
Sbjct: 91  YSNYNNYNNNYNTNYKKLQYY 111


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 397 YSNMKKKTNTYKNSLQHLRYY 335
           YSN     N Y  + + L+YY
Sbjct: 91  YSNYNNYNNNYNTNYKKLQYY 111


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 400 NYSNMKKKTNTYKNSLQHLRYYV 332
           NY+N     N Y N+ + L Y +
Sbjct: 333 NYNNYNNYNNNYNNNYKKLYYNI 355


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 400 NYSNMKKKTNTYKNSL 353
           N   MKK   TYKNS+
Sbjct: 59  NAEGMKKYCETYKNSI 74


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 400 NYSNMKKKTNTYKNSLQHLRYYV 332
           NYSN     N Y N  + L Y +
Sbjct: 90  NYSNYNNYNNNYNNYNKKLYYNI 112


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 129 VYFKLIIHISFLSNNVISNYF 67
           +   +II + F   NVI +YF
Sbjct: 18  IQIPVIIQLPFCGPNVIDHYF 38


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = -1

Query: 472 KTCIFYFVSCFIYILSVV*FTSVCNYS 392
           K    Y V CF+++ + +   +  NY+
Sbjct: 302 KAIDIYLVMCFVFVFAALLEYAAVNYT 328


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 455 FCVVFYIYFVCSVI 414
           FC++F ++F C  I
Sbjct: 453 FCLLFLMFFECIAI 466


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 455 FCVVFYIYFVCSVI 414
           FC++F ++F C  I
Sbjct: 506 FCLLFLMFFECIAI 519


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,345
Number of Sequences: 438
Number of extensions: 2686
Number of successful extensions: 17
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -