Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0350
(739 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0211 - 6436275-6436361,6436969-6437235,6438475-6438543,643... 63 2e-10
07_03_1778 + 29451902-29452166,29452665-29452849,29453504-294536... 30 2.2
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486... 29 2.9
03_06_0290 + 32878040-32880193,32881607-32881720 29 5.1
12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,167... 28 8.9
11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,172... 28 8.9
03_06_0485 + 34242121-34243188 28 8.9
>03_02_0211 -
6436275-6436361,6436969-6437235,6438475-6438543,
6439108-6439236,6439319-6439480,6439558-6439678,
6439813-6439928,6440697-6440762,6441010-6441091,
6441236-6441327,6441430-6441537,6441919-6442013,
6442092-6442234,6442336-6442364,6442452-6442571,
6442645-6442734,6443116-6443181,6443267-6443380,
6443482-6443574
Length = 682
Score = 63.3 bits (147), Expect = 2e-10
Identities = 32/84 (38%), Positives = 47/84 (55%)
Frame = +1
Query: 256 VRGLCDKLYEKRKVAGVEIEKMVKDFNDAKNTSQIKKLIKVLGQDLMSSTNPNMKNGALM 435
+R L DKLYEKRK A +EIE +VK + +I +I +L D S N + G L+
Sbjct: 14 LRNLSDKLYEKRKNAALEIEGIVKQLATSGEHDKISAVIALLTNDFTMSPQANHRKGGLI 73
Query: 436 GLSTVAVGLGKASVDYLPELTNPI 507
GL+ V VGL + +L ++ P+
Sbjct: 74 GLAAVTVGLTSEAAQHLEQIVPPV 97
Score = 54.4 bits (125), Expect = 9e-08
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = +3
Query: 516 FSESESRVRYQAAEALFNVLKIVRGASLSQFPVIFDALAKLAADPE 653
F + +SRVRY A EAL+N+ K+VRG + F IFDAL KL+AD +
Sbjct: 101 FLDQDSRVRYYACEALYNIAKVVRGDFIIYFNKIFDALCKLSADSD 146
Score = 32.3 bits (70), Expect = 0.41
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +2
Query: 653 AQVKHAAELLDRLLKDIVTEN 715
A V+ AA LLDRL+KDIVTE+
Sbjct: 147 ANVQSAAHLLDRLVKDIVTES 167
>07_03_1778 +
29451902-29452166,29452665-29452849,29453504-29453693,
29453990-29454168,29454263-29454314,29454426-29454553,
29454920-29455099,29455209-29455276,29455364-29455506,
29455682-29455743,29455874-29455987,29456180-29456320,
29456680-29456832,29456973-29457026,29457102-29457212,
29457339-29457512,29457600-29457680,29457788-29457886,
29457905-29458057
Length = 843
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -2
Query: 435 HKCSVFHIRIS*RHQVLAQDFDQFFYL-ASIFCIIKIF 325
H+ +V HIRI RH +L + D F YL A +F ++ F
Sbjct: 779 HQTNVPHIRIEFRHTLLCLESDLFPYLSARLFLLVIAF 816
>03_05_0944 + 29046793-29046922,29048091-29048464,29048556-29048687,
29048829-29049210,29049370-29049513,29049593-29049777,
29049925-29050051,29050603-29050676,29051071-29051147,
29051256-29051292,29051453-29051619,29051800-29051983,
29052053-29052130,29052451-29052570,29052648-29052707,
29053057-29053179,29053848-29053941,29054019-29054197,
29054737-29055039,29055373-29055474,29055553-29055693,
29055831-29055995,29056168-29056344,29056432-29056554,
29057787-29057867,29057983-29058099,29058214-29058386,
29058846-29058923,29058994-29059141,29059755-29059877,
29060015-29060071,29060145-29060255,29060382-29060573,
29060690-29060863,29061263-29061373,29061462-29061531,
29061734-29061812,29061898-29062000,29062086-29062256,
29062348-29062470,29062548-29062661,29062935-29063041,
29063117-29063168,29063245-29063351,29063589-29063703,
29063819-29063929,29064016-29064153,29064230-29064352,
29064535-29064606,29064774-29064886,29066780-29067110,
29067199-29067381,29068669-29068863,29068943-29069110,
29069208-29069340,29069511-29069595,29069726-29069765
Length = 2591
Score = 29.5 bits (63), Expect = 2.9
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Frame = +1
Query: 268 CDKLYEKRKVAGVEIEKMVKDFNDAKNTSQIKK--LIKVLGQDLMSSTNPNMKNGALMGL 441
C+K Y +R+ A + +VK F S +KK + +L Q L + + GAL+G
Sbjct: 1309 CEK-YGERRGAAFGLAGVVKGFG----ISSLKKYGIAAILQQGLEDRASAKSREGALLGF 1363
Query: 442 STVAVGLGKASVDYLPELTNPIGLAS 519
+ LGK Y+ ++ P+ L S
Sbjct: 1364 ECLCEKLGKLFEPYVIQML-PLLLVS 1388
>03_06_0290 + 32878040-32880193,32881607-32881720
Length = 755
Score = 28.7 bits (61), Expect = 5.1
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = +3
Query: 426 STYGSV---YCSSGAWQGISRLLTRINKSNRACFSESESRVRYQAAEALFNVLKIVRGAS 596
STY SV YC G ++ + R++ SN + SES S Q E+L ++ KI A
Sbjct: 445 STYSSVVSCYCKLGLYKNALDMFRRLDVSNLSLNSESFS----QLVESLCHMKKIQEAAE 500
Query: 597 LSQF 608
+ ++
Sbjct: 501 VFKY 504
>12_01_0222 -
1675077-1675289,1675476-1675553,1675943-1676002,
1676103-1676206,1676321-1676479,1676768-1676894,
1677569-1677736,1677890-1678000,1678090-1678243,
1678409-1678744,1678854-1679038,1679141-1679239,
1679376-1679639,1679776-1679952,1680351-1680644,
1680753-1680920,1681574-1681918,1682002-1682171,
1682272-1682422,1683296-1683365,1683456-1683640,
1683999-1684092,1684195-1684313,1684658-1684717,
1684844-1684930,1685631-1685717,1685905-1686013,
1686105-1686183,1686350-1686437,1686611-1686675,
1687570-1687722,1688514-1688620,1688702-1688784,
1688926-1689016,1689095-1689231,1689612-1689701,
1689795-1689962,1690366-1690560
Length = 1809
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -1
Query: 244 QRCVVSLGHRVWNSLFEIYRNSKNNLMMSNPRNQ 143
Q+ ++SLGH WN L + N+ +L+ S R++
Sbjct: 763 QKILISLGHLSWNELSFAHLNNALDLIFSLSRSK 796
>11_01_0221 -
1720952-1721164,1721351-1721428,1721836-1721895,
1721996-1722099,1722214-1722372,1722668-1722794,
1723469-1723636,1723789-1723899,1723989-1724142,
1724308-1724643,1724753-1724937,1725040-1725138,
1725275-1725538,1725674-1725850,1726249-1726542,
1726649-1726816,1727473-1727817,1727901-1728070,
1728171-1728321,1729193-1729262,1729353-1729537,
1729896-1729989,1730094-1730212,1730558-1730617,
1730744-1730830,1732348-1732434,1732622-1732730,
1732822-1732900,1733067-1733154,1733328-1733392,
1734287-1734439,1735231-1735337,1735419-1735501,
1735643-1735733,1735812-1735948,1736118-1736207,
1736301-1736468,1736875-1737057
Length = 1805
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -1
Query: 244 QRCVVSLGHRVWNSLFEIYRNSKNNLMMSNPRNQ 143
Q+ ++SLGH WN L + N+ +L+ S R++
Sbjct: 759 QKILISLGHLSWNELSFAHLNNALDLIFSLSRSK 792
>03_06_0485 + 34242121-34243188
Length = 355
Score = 27.9 bits (59), Expect = 8.9
Identities = 27/109 (24%), Positives = 41/109 (37%)
Frame = +1
Query: 184 FCKFQINYSIHDVRARLRTAEHSFVRGLCDKLYEKRKVAGVEIEKMVKDFNDAKNTSQIK 363
FC F NYS+ R +T + RG L G K K + +TS
Sbjct: 71 FCYFN-NYSLSQPRHFCKTCRRYWTRG--GALRNVPVGGGCRRNKRTKSSKSSSSTSAAG 127
Query: 364 KLIKVLGQDLMSSTNPNMKNGALMGLSTVAVGLGKASVDYLPELTNPIG 510
G SST+ G+ + A+ +A + +L L +P+G
Sbjct: 128 SASATGGTS--SSTSSTATGGSSSAAAAAAMMPPQAQLPFLASLHHPLG 174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,118,259
Number of Sequences: 37544
Number of extensions: 309036
Number of successful extensions: 690
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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