Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0350
         (739 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49033| Best HMM Match : HEAT (HMM E-Value=3.4)                      77   1e-14
SB_26421| Best HMM Match : HEAT (HMM E-Value=1.4e-07)                  49   5e-06
SB_27851| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_21904| Best HMM Match : Vinculin (HMM E-Value=0)                    29   3.9  
SB_4820| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.1  

>SB_49033| Best HMM Match : HEAT (HMM E-Value=3.4)
          Length = 84

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 37/71 (52%), Positives = 48/71 (67%)
 Frame = +1

Query: 256 VRGLCDKLYEKRKVAGVEIEKMVKDFNDAKNTSQIKKLIKVLGQDLMSSTNPNMKNGALM 435
           VRGL DKLYEKRK A +E+E+MVK+F       QIKKL +VL +D   S N + + G L+
Sbjct: 14  VRGLNDKLYEKRKTAALEVERMVKEFVANNEVKQIKKLTQVLAEDFAVSHNSHARKGGLI 73

Query: 436 GLSTVAVGLGK 468
           GL+  A+ LGK
Sbjct: 74  GLAAAAIALGK 84


>SB_26421| Best HMM Match : HEAT (HMM E-Value=1.4e-07)
          Length = 56

 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 20/42 (47%), Positives = 30/42 (71%)
 Frame = +3

Query: 510 ACFSESESRVRYQAAEALFNVLKIVRGASLSQFPVIFDALAK 635
           +CF + +SRVRY A EAL+N+ K+ RG+ L  F  +F+ L+K
Sbjct: 15  SCFYDQDSRVRYYACEALYNIAKVARGSVLPFFNEVFEGLSK 56


>SB_27851| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 238 TAEHSFVRGLCDKLYEKRKVAGVEIEKMVKDFNDAKNTSQIKKLIKV 378
           T EH   RG    L E+   +G+E+ K +K   D KN     K++++
Sbjct: 312 TGEHGIGRGKLALLEEEVGPSGIEVMKQIKQMLDPKNLMNPGKVLRM 358


>SB_21904| Best HMM Match : Vinculin (HMM E-Value=0)
          Length = 999

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 310 IEKMVKDFNDAKNTSQIKKLIKVLGQDLMS 399
           +E+ +KD   A NT+ +    K LG DLM+
Sbjct: 164 VERRLKDLEGASNTADLLNSFKNLGNDLMN 193


>SB_4820| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 28/116 (24%), Positives = 47/116 (40%)
 Frame = +1

Query: 166 LDYFYCFCKFQINYSIHDVRARLRTAEHSFVRGLCDKLYEKRKVAGVEIEKMVKDFNDAK 345
           L++F    KF +  +  D + ++     +F      K  E    AG+EIE+ +   +   
Sbjct: 24  LEFFLNGPKFALMSTAQDEKIKIHDLTLNF------KHVEPTVSAGLEIERALNAGDALI 77

Query: 346 NTSQIKKLIKVLGQDLMSSTNPNMKNGALMGLSTVAVGLGKASVDYLPELTNPIGL 513
             S  K ++  L  D +  T    KNG  + +  +  G   A   YLPE    + L
Sbjct: 78  YHSLHKSVLGDLVGDSVGITLEEFKNGYTIYVINLTEGHNAAKGSYLPEYNGRVDL 133


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,490,462
Number of Sequences: 59808
Number of extensions: 383204
Number of successful extensions: 818
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)