Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0348
(666 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0) 46 4e-05
SB_27317| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 5e-05
SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0) 40 0.002
SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0) 38 0.010
SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27) 37 0.017
SB_20276| Best HMM Match : Thioredoxin (HMM E-Value=9.8e-06) 37 0.017
SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.022
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0) 36 0.030
SB_30496| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.068
SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21) 32 0.37
SB_10433| Best HMM Match : Keratin_B2 (HMM E-Value=4.4) 32 0.48
SB_44003| Best HMM Match : DUF658 (HMM E-Value=1.1) 30 1.5
SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 3.4
SB_38575| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_3640| Best HMM Match : Thioredoxin (HMM E-Value=4.3e-33) 29 3.4
SB_31969| Best HMM Match : 7tm_1 (HMM E-Value=0) 29 4.5
SB_12057| Best HMM Match : 7tm_1 (HMM E-Value=0) 29 4.5
SB_9274| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19) 28 5.9
SB_30394| Best HMM Match : Helicase_C (HMM E-Value=1e-20) 28 5.9
SB_2321| Best HMM Match : DUF1461 (HMM E-Value=2.1) 28 5.9
SB_54070| Best HMM Match : Phage_integr_N (HMM E-Value=0.041) 28 7.9
SB_52257| Best HMM Match : zf-CCHC (HMM E-Value=0.26) 28 7.9
SB_50604| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09) 28 7.9
SB_21724| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_49460| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_25332| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_7959| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 362
Score = 45.6 bits (103), Expect = 4e-05
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Frame = +2
Query: 95 ELNENNW-KEILEGE--WMLEFYAPWCPACNALAPVGRSSLHELPKTLSLYVLLQLSH*L 265
EL + N+ KE+L + W++EF+APWC C LAP + EL + + L H +
Sbjct: 83 ELTDTNFEKEVLNSKDLWLVEFFAPWCGHCQRLAPEWAKAATELKGKVKVGALDATVHTV 142
Query: 266 AWSKWKICCYRTAYYF 313
S++++ Y T F
Sbjct: 143 TASRYQVQGYPTIKVF 158
>SB_27317| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 45.2 bits (102), Expect = 5e-05
Identities = 18/34 (52%), Positives = 26/34 (76%)
Frame = +2
Query: 518 YGLPSWGSYLIFAIATIFVGALVGLILVCVIDFL 619
YGLPS+ SY IF + T+ +G +GL+LVCV ++L
Sbjct: 35 YGLPSYVSYAIFGVCTVGLGLCLGLVLVCVSEYL 68
>SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 295
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
Frame = +2
Query: 95 ELNENNWKEILEGEW--MLEFYAPWCPACNALAP 190
+L ++N+ E++ GE ++EFYAPWC C LAP
Sbjct: 26 DLTKDNFDEVVNGEKFALVEFYAPWCGHCKQLAP 59
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +3
Query: 273 LSGRFVVTALPTIFHVKDGEF--RQYKGPRDVESMLTFVENK 392
L RF V PTI + G +Y G RD+ + F+E K
Sbjct: 87 LGSRFDVKGFPTIKYFPKGSTTPEEYNGGRDINDFIKFIEEK 128
>SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 564
Score = 38.3 bits (85), Expect = 0.006
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Frame = +2
Query: 47 FIVLLCSTIDFASAN--KELNENNWKEIL-EGEWML-EFYAPWCPACNALAP 190
FI+L S SAN +LN N+ +++ E + ML +FYAPWC C L P
Sbjct: 6 FILLFFSAFSSGSANFVYDLNAQNFDQMIREKDIMLVDFYAPWCHHCQELLP 57
>SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 98 LNENNWKEILEGE--WMLEFYAPWCPACNALAPVGRSSLHELPK 223
L + N+ E++ E ++EF+APWC C LAP + EL K
Sbjct: 181 LTKENFTEVVNRESLMLVEFFAPWCGHCKQLAPEYEKAAQELQK 224
Score = 36.7 bits (81), Expect = 0.017
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +2
Query: 98 LNENNWKEILEGE--WMLEFYAPWCPACNALAP 190
LN N+ ++E ++EFYAPWC C +LAP
Sbjct: 66 LNSKNFDRVIEENNIILVEFYAPWCGHCKSLAP 98
Score = 36.3 bits (80), Expect = 0.022
Identities = 21/71 (29%), Positives = 38/71 (53%)
Frame = +3
Query: 258 TNSPGLSGRFVVTALPTIFHVKDGEFRQYKGPRDVESMLTFVENKKWKQTDPIPGWKAPD 437
T + ++ RF V+ PT+ + G +Y+GPR+ ++ +++ KQ+D P WK P
Sbjct: 122 TVASDIAQRFDVSGYPTLKIFRKGTPYEYEGPREESGIVEYMK----KQSD--PNWKPPP 175
Query: 438 SLQMSLVAEFF 470
++L E F
Sbjct: 176 VAALTLTKENF 186
>SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 1056
Score = 37.5 bits (83), Expect = 0.010
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +2
Query: 44 SFIVLLCSTIDFASANKELNENNWKEILEGE--WMLEFYAPWCPACNALAPVGRSSLHEL 217
S VLL +S +L ++N+K + G+ ++EF+APWC C LAP ++ L
Sbjct: 525 SAFVLLFVGSTLSSDVLDLGDSNFKSGVAGKDIMLVEFFAPWCGHCKRLAPEYETAAEAL 584
Query: 218 PK 223
K
Sbjct: 585 KK 586
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Frame = +2
Query: 110 NWKEILEG---EWMLEFYAPWCPACNALAP 190
N+KEI+ + ++EFYAPWC C +L P
Sbjct: 871 NFKEIVNDPTKDVLIEFYAPWCGHCKSLEP 900
>SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27)
Length = 472
Score = 36.7 bits (81), Expect = 0.017
Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
Frame = +2
Query: 98 LNENNWKE-ILEGEWML-EFYAPWCPACNALAPV 193
LN+ N+ E I + E++L +FYAPWC C L+P+
Sbjct: 56 LNDQNFNETIKKNEYVLVDFYAPWCSDCQRLSPL 89
Score = 31.9 bits (69), Expect = 0.48
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +2
Query: 95 ELNENNWKEILEGEW--MLEFYAPWCPACNALAPVGRSSLHEL 217
EL+++N++ ++ +++FYAPWC C +AP + EL
Sbjct: 138 ELDDSNFEPAVQKHKFVLVDFYAPWCFHCKKMAPDYKDVAKEL 180
>SB_20276| Best HMM Match : Thioredoxin (HMM E-Value=9.8e-06)
Length = 70
Score = 36.7 bits (81), Expect = 0.017
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +2
Query: 53 VLLCSTIDFASANKELNENNWKEILEGE--WMLEFYAPWCPACNALAPVGRSSLHELPK 223
VLL +S +L ++N+K + G+ ++EF+APWC C LAP ++ L K
Sbjct: 3 VLLFVGSTLSSDVLDLGDSNFKSGVAGKDIMLVEFFAPWCGHCKRLAPEYETAAEALKK 61
>SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 711
Score = 36.3 bits (80), Expect = 0.022
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +2
Query: 95 ELNENNW-KEILEGE--WMLEFYAPWCPACNALAP 190
E+N N+ ++L E W+++FYAPWC C AP
Sbjct: 437 EVNSKNFFTDVLASEDAWVVDFYAPWCGPCMRFAP 471
Score = 31.1 bits (67), Expect = 0.84
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 137 WMLEFYAPWCPACNALAPVGRSS 205
+ ++F+APWCP C L P R +
Sbjct: 305 FFVDFFAPWCPPCMRLLPEYRKA 327
>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 536
Score = 35.9 bits (79), Expect = 0.030
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 98 LNENNWKEILEGEW--MLEFYAPWCPACNALAP 190
L E N+ E + ++EFYAPWC C ALAP
Sbjct: 29 LTEKNFDEAVAANKHVLVEFYAPWCGHCKALAP 61
Score = 33.1 bits (72), Expect = 0.21
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 143 LEFYAPWCPACNALAPV 193
+EFYAPWC C LAP+
Sbjct: 407 VEFYAPWCGHCKQLAPI 423
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 273 LSGRFVVTALPTIFHVKDGEFRQYKGPRDVESMLTFVENK 392
L +F V PTI KDG+ +Y G R +++++ K
Sbjct: 90 LGEKFQVQGYPTIKFFKDGKPSEYAGGRTAPEIVSWLNKK 129
>SB_30496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 34.7 bits (76), Expect = 0.068
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Frame = +2
Query: 32 IFSFSFIVLLCSTIDFASANKE-----LNENNWKEILEGE--WMLEFYAPWCPACNALAP 190
+ + +F+V LC I + A KE L + ++ L+ + +++FYAPWC C+ L P
Sbjct: 1 MLAIAFVVALC-VIAPSYARKENPIFELTDQDFDNFLKDKEVMLVDFYAPWCSDCDNLRP 59
Query: 191 VGRSSLHELPK 223
+ +L K
Sbjct: 60 KYEKAARDLAK 70
>SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21)
Length = 186
Score = 32.3 bits (70), Expect = 0.37
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 98 LNENNWKEILE-GEWMLEFYAPWCPACNALAPV 193
L +N + + +E G ++FYAPWC C LAP+
Sbjct: 95 LTKNTFDKHIELGLHFVKFYAPWCIHCIKLAPI 127
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 291 VTALPTIFHVKDGEFRQYKGPRDVESMLTFVE 386
+ A PT+ DG+ ++Y G R+ E M FV+
Sbjct: 38 IRAYPTMKLYYDGDIKRYTGRRNAEDMKVFVD 69
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 291 VTALPTIFHVKDG-EFRQYKGPRDVESMLTFV 383
+ PT+ KDG + ++Y G RD++S+ F+
Sbjct: 146 INGYPTLMLFKDGVQKKEYSGNRDLDSLYRFI 177
>SB_10433| Best HMM Match : Keratin_B2 (HMM E-Value=4.4)
Length = 212
Score = 31.9 bits (69), Expect = 0.48
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -2
Query: 233 GREFLAARVESSFQLALEHCRQDTMGRRIRASIL 132
GREF AAR ++ L +C RRIR S+L
Sbjct: 9 GREFFAARYNTTHYLGTRYCPAQQNSRRIRYSLL 42
>SB_44003| Best HMM Match : DUF658 (HMM E-Value=1.1)
Length = 572
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +3
Query: 81 LVQTKN*MKTTGKKSSKENGCSNSTPHGVL 170
LV + K GKK K NG NSTP VL
Sbjct: 124 LVSKRGVKKVVGKKYEKANGIVNSTPSNVL 153
>SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1041
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 351 PRDVESMLTFVENKKWKQTDPIPGWKAPDS 440
P + SM+T + + Q P PGW+ PDS
Sbjct: 721 PNEENSMVTVMVRDQGIQACPRPGWEQPDS 750
>SB_38575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 52
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 242 VRRGREFLAARVESSFQLALEHCRQDTMGRRIRASIL 132
V++ REF AR ++ L HC R IR S+L
Sbjct: 3 VQQNREFFDARYNTTHYLGTRHCPAQQNSRGIRYSLL 39
>SB_3640| Best HMM Match : Thioredoxin (HMM E-Value=4.3e-33)
Length = 386
Score = 29.1 bits (62), Expect = 3.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 140 MLEFYAPWCPACNALAP 190
++ FYAPWC C A+ P
Sbjct: 103 LVMFYAPWCGHCKAMKP 119
>SB_31969| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 655
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Frame = +2
Query: 503 YAMEAYGLPSW-GSYLIFAIATIFV----GALVGLILVCV-IDFLHPLRKSTRSLY 652
YA+ A+ +P W G L A+A ++V A+VG +LVC+ + LR++T S +
Sbjct: 17 YAL-AHLVPPWHGDPLTVALAVLYVIVIVSAIVGNVLVCIAVCISSSLRRATSSYF 71
>SB_12057| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 383
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +2
Query: 542 YLIFAIATIFVGALVGLILVCVIDFLHPLRKSTRS 646
Y +FAI IF+ +VG LVC++ F P ++TR+
Sbjct: 28 YSLFAI--IFIVGVVGNSLVCLVIFKTPNMRNTRN 60
>SB_9274| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1230
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Frame = +1
Query: 403 KPIPSRDGRHLTHCKCPWLLSSSR*VKHFGEST----ICYGSIRLTIMG-FIPYIRHCHN 567
KPI S D R ++ C W+ + G ST I G++ I G +PY+ HN
Sbjct: 378 KPIQSDDYRRVSFENCTWINNKGTLGSSIGLSTPATEITLGNLNPAIEGPLVPYVVTLHN 437
>SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19)
Length = 975
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 140 MLEFYAPWCPACNALAPV 193
+L FY PWC C APV
Sbjct: 539 LLVFYTPWCGMCINFAPV 556
>SB_30394| Best HMM Match : Helicase_C (HMM E-Value=1e-20)
Length = 556
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 384 ENKKWKQTDPIPGWKAPDSLQMSLVAEFFKMSQALRGV 497
EN + K+T + K PDS+Q ++ EF K + +R V
Sbjct: 278 ENVESKETYAMFHSKTPDSIQKEVLGEFIKSNSKIRVV 315
>SB_2321| Best HMM Match : DUF1461 (HMM E-Value=2.1)
Length = 340
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/36 (30%), Positives = 24/36 (66%)
Frame = +2
Query: 29 LIFSFSFIVLLCSTIDFASANKELNENNWKEILEGE 136
LIF F+F++ +C T+ F+ + ++NW +++G+
Sbjct: 108 LIFGFAFLLWVC-TLVFSVMEADFLQDNWDLLVKGK 142
>SB_54070| Best HMM Match : Phage_integr_N (HMM E-Value=0.041)
Length = 988
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = +2
Query: 536 GSYLIFAIATIFVGALVGLILVCVIDFL 619
GS+++ AIA+I V A+ +I++ ++ +
Sbjct: 256 GSFIVIAIASIIVIAIASIIVIAIVSII 283
>SB_52257| Best HMM Match : zf-CCHC (HMM E-Value=0.26)
Length = 208
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 94 RTK*KQLERNPRRRMDARILRPMVSCLQCSS 186
R++ K L+R P RR I+ P + C C S
Sbjct: 37 RSEDKPLQRPPERRSSPDIVSPRLKCYLCQS 67
>SB_50604| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 521 GLPSWGSYLIFAIATIFVGALVGLILVCVIDFLHPLRKSTRSLYRDLN 664
GL W +I A +FV A+V + L+C L RK L++D N
Sbjct: 504 GLKDWEIAVIVACVVVFVMAVVIIALLCYAKRLKK-RKQKYDLWKDDN 550
>SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09)
Length = 321
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 588 PTRAPTNIVAMANIRYEPHDGKPYASIAYCG 496
P RAP N+ A Y+P K Y +CG
Sbjct: 164 PIRAPKNLRATIRWDYQPDICKDYKETGFCG 194
>SB_21724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 239 RRGREFLAARVESSFQLALEHCRQDTMGRRIRASIL 132
++ REF AAR + L HC R IR S+L
Sbjct: 2 QQNREFFAARYIPTHYLGTRHCPAQQNSRGIRYSLL 37
>SB_49460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 248 AAVRRGREFLAARVESSFQLALEHCRQDTMGRRIRASIL 132
A++++ REF AAR + L +C R IR S+L
Sbjct: 2 ASLQQNREFFAARYIPTHYLGTRYCPAQQNSRGIRYSLL 40
>SB_25332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 41
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 291 VTALPTIFHVKDG-EFRQYKGPRDVESMLTFV 383
+ PT+ KDG + ++Y G RD++S+ F+
Sbjct: 1 INGYPTLMLFKDGVQKKEYSGNRDLDSLYRFI 32
>SB_7959| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 50
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 239 RRGREFLAARVESSFQLALEHCRQDTMGRRIRASIL 132
++ REF AAR + L HC R IR S+L
Sbjct: 2 QQNREFFAARYIPTHYLGARHCPAQQNSRGIRYSLL 37
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,947,356
Number of Sequences: 59808
Number of extensions: 490868
Number of successful extensions: 1311
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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