Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0347
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 100 2e-22
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 62 9e-11
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 57 3e-09
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 49 7e-07
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 47 3e-06
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 44 2e-05
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 44 3e-05
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 43 3e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 41 1e-04
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 40 2e-04
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 40 4e-04
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 38 0.001
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 38 0.001
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 37 0.002
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 37 0.002
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 37 0.002
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 36 0.007
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 36 0.007
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 35 0.012
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 35 0.012
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 34 0.016
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 33 0.048
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 33 0.048
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 32 0.083
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 29 0.59
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 27 3.1
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 26 4.1
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 5.5
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 26 5.5
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces... 25 7.2
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.2
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom... 25 9.5
SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|... 25 9.5
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 100 bits (240), Expect = 2e-22
Identities = 43/85 (50%), Positives = 59/85 (69%)
Frame = +1
Query: 247 FQQNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 426
FQ++FY H V RS EV EYR E+ V G+ V P+ FEEA FP+YV + VK +G
Sbjct: 82 FQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLG 141
Query: 427 YKEPTPIQAQGWPIAMSGKNLVGVA 501
++ PTPIQ Q WP+AMSG+++VG++
Sbjct: 142 FEAPTPIQQQAWPMAMSGRDMVGIS 166
Score = 76.2 bits (179), Expect = 4e-15
Identities = 37/50 (74%), Positives = 39/50 (78%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 655
GSGKTL+Y LPAIVHIN QP + GDGPI LVLAPTRELA QIQQ F
Sbjct: 169 GSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKF 218
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 61.7 bits (143), Expect = 9e-11
Identities = 25/43 (58%), Positives = 35/43 (81%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 634
GSGKT+A++LP HI +Q P++ G+GPIA+++ PTRELA QI
Sbjct: 465 GSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQI 507
Score = 54.8 bits (126), Expect = 1e-08
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Frame = +1
Query: 247 FQQNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTM 423
F+++FY + SP EV+E R + + + + G++ P+ + + + ++
Sbjct: 377 FKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVINSL 436
Query: 424 GYKEPTPIQAQGWPIAMSGKNLVGVAK 504
GY++PT IQAQ P SG++++GVAK
Sbjct: 437 GYEKPTSIQAQAIPAITSGRDVIGVAK 463
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 56.8 bits (131), Expect = 3e-09
Identities = 28/47 (59%), Positives = 35/47 (74%), Gaps = 3/47 (6%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQ 637
GSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ
Sbjct: 296 GSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342
Score = 51.2 bits (117), Expect = 1e-07
Identities = 19/63 (30%), Positives = 41/63 (65%)
Frame = +1
Query: 316 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 495
+ ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 496 VAK 504
+A+
Sbjct: 292 IAE 294
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 48.8 bits (111), Expect = 7e-07
Identities = 21/48 (43%), Positives = 34/48 (70%)
Frame = +1
Query: 361 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 504
PI F+E + +++G+K YKEPTPIQA WP ++G+++VG+A+
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAE 210
Score = 35.5 bits (78), Expect = 0.007
Identities = 19/42 (45%), Positives = 28/42 (66%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 631
GSGKT+A+ +PA+ ++N + P LV++PTRELA Q
Sbjct: 212 GSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQ 251
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 46.8 bits (106), Expect = 3e-06
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPI--RRGDGPIALVLAPTRELAQQIQQVA 646
GSGKTLAY+LP + + P R G A+++APTREL QQI VA
Sbjct: 188 GSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVA 236
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 44.0 bits (99), Expect = 2e-05
Identities = 24/49 (48%), Positives = 30/49 (61%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 652
GSGKTLAY+LP + + G G AL++APTRELA QI V +
Sbjct: 48 GSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94
Score = 34.3 bits (75), Expect = 0.016
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 373 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 492
F+ N +++ V G+K+ TP+QA P+ + K+LV
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLV 42
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 43.6 bits (98), Expect = 3e-05
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQV 643
GSGKT AY++P + + Q I G AL+L PTRELAQQ+ V
Sbjct: 61 GSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
Score = 35.1 bits (77), Expect = 0.009
Identities = 14/54 (25%), Positives = 31/54 (57%)
Frame = +1
Query: 343 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 504
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LV A+
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQAR 59
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 43.2 bits (97), Expect = 3e-05
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +1
Query: 331 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 504
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+ A+
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQ 214
Score = 28.3 bits (60), Expect = 1.0
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 13/63 (20%)
Frame = +2
Query: 506 GSGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRELAQQIQQVA 646
GSGKT ++ P + + + P P+ + G P L+LAPTREL QI + +
Sbjct: 216 GSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEES 275
Query: 647 ADF 655
F
Sbjct: 276 RKF 278
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 41.1 bits (92), Expect = 1e-04
Identities = 21/49 (42%), Positives = 30/49 (61%)
Frame = +2
Query: 500 PNGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 646
P GSGKT+AY+ P + + P G A+++APTREL +QI + A
Sbjct: 91 PTGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTRELCEQIYRQA 135
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 40.3 bits (90), Expect = 2e-04
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 655
GSGKT A+++P I H+ + AL+L+P RELA Q +V DF
Sbjct: 116 GSGKTAAFVIPMIEHLKST---LANSNTRALILSPNRELALQTVKVVKDF 162
Score = 33.9 bits (74), Expect = 0.021
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +1
Query: 373 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 504
F+ + + + G+K PTPIQ + P+ + G+++VG+A+
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMAR 114
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 39.5 bits (88), Expect = 4e-04
Identities = 24/46 (52%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQ 640
GSGKT A+ LP I + NN P A+VLAPTRELA QI +
Sbjct: 93 GSGKTAAFALPVIQELWNNPSPF------FAVVLAPTRELAYQISE 132
Score = 36.7 bits (81), Expect = 0.003
Identities = 13/44 (29%), Positives = 29/44 (65%)
Frame = +1
Query: 373 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 504
F+E D + + + +G+K PTPIQ + P+ ++ ++++G+A+
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQ 91
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 38.3 bits (85), Expect = 0.001
Identities = 25/49 (51%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI-QQVAA 649
GSGKT A+ LP I + P G AL+L PTRELA QI +Q AA
Sbjct: 54 GSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRELAIQIDEQFAA 97
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 37.9 bits (84), Expect = 0.001
Identities = 22/42 (52%), Positives = 29/42 (69%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 631
GSGKTLA+I+P I ++ + DG ALV++PTRELA Q
Sbjct: 86 GSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQ 126
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 37.1 bits (82), Expect = 0.002
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 646
GSGKT A+I+P + + +P ++ L+L PTRELA Q VA
Sbjct: 306 GSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPTRELAMQCHSVA 350
Score = 36.7 bits (81), Expect = 0.003
Identities = 15/43 (34%), Positives = 27/43 (62%)
Frame = +1
Query: 373 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVA 501
F+ N + +G+ +G++ PT IQ + P+A+ GK++VG A
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAA 303
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 37.1 bits (82), Expect = 0.002
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Frame = +2
Query: 506 GSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 652
GSGKTLA+++P I ++ P R G G ++++PTRELA QI VA +
Sbjct: 136 GSGKTLAFLIPTIEMLYALKFKP-RNGTG--VIIISPTRELALQIFGVAKE 183
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 37.1 bits (82), Expect = 0.002
Identities = 24/47 (51%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGDGPI--ALVLAPTRELAQQIQQ 640
GSGKTLA+ +P + H +R D ALV+APTRELA QI Q
Sbjct: 169 GSGKTLAFGIPILEHC-----LRNVDAKYVQALVVAPTRELAHQICQ 210
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 35.5 bits (78), Expect = 0.007
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +1
Query: 373 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 504
FE+ + G+ G++ P+PIQ + PIA+SG++++ AK
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAK 89
Score = 35.5 bits (78), Expect = 0.007
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +2
Query: 503 NGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 643
NG+GKT A+++P++ ++ + + L+L PTRELA Q QV
Sbjct: 90 NGTGKTAAFVIPSLEKVDTKKSKIQ-----TLILVPTRELALQTSQV 131
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 35.5 bits (78), Expect = 0.007
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 646
G+GKTLA++L A + P +++L+PTRELA QI + A
Sbjct: 86 GTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEA 132
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 34.7 bits (76), Expect = 0.012
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = +2
Query: 503 NGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 643
+G+GKT + + + I+ +++ AL+LAPTRELAQQIQ+V
Sbjct: 65 SGTGKTATFSISVLQKIDTS--LKQCQ---ALILAPTRELAQQIQKV 106
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 34.7 bits (76), Expect = 0.012
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +2
Query: 503 NGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 652
+G+GKT A+ L + ++ P P A+ LAP+RELA+QI V +
Sbjct: 162 SGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTE 206
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 34.3 bits (75), Expect = 0.016
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = +1
Query: 307 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 486
+E N E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 487 LVGVAK 504
++ A+
Sbjct: 61 VIAQAQ 66
Score = 29.1 bits (62), Expect = 0.59
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +2
Query: 593 ALVLAPTRELAQQIQQV 643
AL+L+PTRELA QIQ V
Sbjct: 92 ALILSPTRELAVQIQNV 108
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 32.7 bits (71), Expect = 0.048
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 500 PNGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 634
P G GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1214 PTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 32.7 bits (71), Expect = 0.048
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 500 PNGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 634
P G GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1214 PTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 31.9 bits (69), Expect = 0.083
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 634
GSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 183 GSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 29.1 bits (62), Expect = 0.59
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 503 NGSGKTLAYILPAIVHINNQPPIRRGDGPIA-LVLAPTRELAQQIQQVAADF 655
+G GKT ++L + I P+ DG ++ LVL TRELA QI+ A F
Sbjct: 97 SGMGKTAVFVLSTLQQIE---PV---DGEVSVLVLCHTRELAFQIKNEYARF 142
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 26.6 bits (56), Expect = 3.1
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 11/64 (17%)
Frame = -1
Query: 214 THVLTSREFF--FPTKSSRSSKS-------IATV--AKSRRIIAEFVASSKFGTTVSTAI 68
T +S EFF +P SS SS S +A+ A S + + + ASS+ T+ S+ +
Sbjct: 138 TSATSSSEFFTSYPATSSESSSSYPASSTEVASSYSASSTEVTSSYPASSEVATSTSSYV 197
Query: 67 IPVT 56
PV+
Sbjct: 198 APVS 201
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 500 PNGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 628
P G GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 542 PTGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -1
Query: 229 IPIWATHVLTSREFFFP-TKSSRSSKSIATVAKSRRIIAEFVASSKFGT 86
I + +T + T+R + TKSS SSK +K+ R + A K GT
Sbjct: 1109 ISLASTSLSTNRSLYTQYTKSSNSSKMTRNTSKNNRRLERKRARGKKGT 1157
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Frame = -3
Query: 161 LQIYCHRCQIE----KNYRRICCLLQIWNHRFHGYYSSYQT*LFFGFS*RCLFKLWI 3
+ +Y Q+E +NY I C L +WN Y +F + +++W+
Sbjct: 164 IHVYRRYIQVEPRAIENYIEILCKLGLWNEAARQYEDILNRPVFLSAKRKSNYQIWL 220
>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 287
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/64 (28%), Positives = 27/64 (42%)
Frame = +1
Query: 460 WPIAMSGKNLVGVAKRVRQNVGLHLASHCAHKQPTAYSER*WSDCFGLGAYQRVSTTNSA 639
WP+ + +N +GV A AHKQ ER + L ++Q + S
Sbjct: 159 WPLKETFENKLGVQLSYLDGD----AGIIAHKQTQETHERIRNWLSSLNSWQLAAFERSV 214
Query: 640 SCCR 651
SCC+
Sbjct: 215 SCCK 218
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -1
Query: 424 PLSLHLVAHNQENL--LLQSIE 365
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 370
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = +1
Query: 331 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 504
V V VE PI Y GV +GY + P G P+ ++GK + V K
Sbjct: 253 VCVKHVEKDQPIGYGGAYVTTRDSLIGVVAIGYGDGFPQVRNGCPVIINGKRVPTVGK 310
>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 243
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Frame = +1
Query: 382 ANFPDYVQQGVKTMGYKEPTPIQAQ------GWPIAMSGKNLVGVAKRVRQN 519
A F D +Q + ++E IQ Q G PI KNL+ +AKR+++N
Sbjct: 85 AKFGDGIQIAQLALKHRE-NKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKN 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,530,963
Number of Sequences: 5004
Number of extensions: 52967
Number of successful extensions: 214
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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