Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0347
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       57   2e-10
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    24   1.1  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   7.9  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   7.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   7.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   7.9  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   7.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 56.8 bits (131), Expect = 2e-10
 Identities = 26/62 (41%), Positives = 38/62 (61%)
 Frame = +1

Query: 319 NNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 498
           +N +V VSG  V  PI+ FE A   + V   +K  GYK+PTP+Q    PI M+G++L+  
Sbjct: 180 DNIQVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMAC 239

Query: 499 AK 504
           A+
Sbjct: 240 AQ 241



 Score = 25.4 bits (53), Expect = 0.48
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = +2

Query: 506 GSGKTLAYILPAIVHINNQPP----IRRGDGPIALVLAPTRELAQQIQQVAADF 655
           GSGKT A+ +P I  +  +            P  ++++PTREL  QI Q    F
Sbjct: 243 GSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKF 296


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = -3

Query: 524 PTFCRTRLATPTKFFPDI--AIGQ 459
           P  CRT+    TK  PDI  AIGQ
Sbjct: 22  PHTCRTKNGDYTKIMPDILTAIGQ 45


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -1

Query: 226 PIWATHVLTSREFFFP 179
           P+W  H+   R   FP
Sbjct: 634 PVWGRHIYDGRAMGFP 649


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 291 SFENCRMWIIKVLLKGWSETE 229
           +F +    II   LKGW E E
Sbjct: 24  AFAHSNQLIIDKSLKGWKEVE 44


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 60  TGIIAVETVVPNLEEATNSA 119
           T + A   V P +EE TN+A
Sbjct: 412 TALGAAALVAPGMEEPTNTA 431


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -1

Query: 226 PIWATHVLTSREFFFP 179
           P+W  H+   R   FP
Sbjct: 634 PVWGRHIYDGRAMGFP 649


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 223 LGFCFAPTFQQNFYDPHPTVLKR 291
           LGF  APT    F   HP  L R
Sbjct: 343 LGFPSAPTIDGIFLPKHPLDLLR 365


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 223 LGFCFAPTFQQNFYDPHPTVLKR 291
           LGF  APT    F   HP  L R
Sbjct: 343 LGFPSAPTIDGIFLPKHPLDLLR 365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,100
Number of Sequences: 438
Number of extensions: 3671
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)