Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0347
(655 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 102 2e-22
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 97 1e-20
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 97 1e-20
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 77 1e-14
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 77 1e-14
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 77 1e-14
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 72 4e-13
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 69 2e-12
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 69 2e-12
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 66 1e-11
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 61 7e-10
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 56 2e-08
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 56 2e-08
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 50 1e-06
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 48 4e-06
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 47 1e-05
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 44 9e-05
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 44 1e-04
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 44 1e-04
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 44 1e-04
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 42 3e-04
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 42 4e-04
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 42 4e-04
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 42 5e-04
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 41 6e-04
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 41 6e-04
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 40 0.001
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 40 0.001
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 40 0.001
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 40 0.001
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 40 0.001
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 40 0.001
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 40 0.001
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 40 0.002
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 40 0.002
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 39 0.003
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 39 0.003
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 38 0.004
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 38 0.006
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 38 0.008
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 37 0.010
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 37 0.010
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 37 0.010
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 36 0.018
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 36 0.031
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 36 0.031
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 36 0.031
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 35 0.041
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 35 0.041
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 35 0.054
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 34 0.072
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 34 0.072
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 34 0.072
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 33 0.17
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 33 0.22
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 33 0.22
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 33 0.22
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 31 0.88
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 28 4.7
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 28 4.7
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 28 4.7
At3g59750.1 68416.m06666 receptor lectin kinase, putative simila... 28 4.7
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 4.7
At2g25460.1 68415.m03049 expressed protein 28 4.7
At5g16590.1 68418.m01942 leucine-rich repeat transmembrane prote... 27 8.2
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 27 8.2
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 27 8.2
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 27 8.2
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 102 bits (244), Expect = 2e-22
Identities = 42/86 (48%), Positives = 60/86 (69%)
Frame = +1
Query: 247 FQQNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 426
F++NFY P V + EVEEYR E+TV G ++ P++ F + FPDYV + VK G
Sbjct: 59 FEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVKKAG 118
Query: 427 YKEPTPIQAQGWPIAMSGKNLVGVAK 504
+ EPTPIQ+QGWP+AM G++L+G+A+
Sbjct: 119 FTEPTPIQSQGWPMAMKGRDLIGIAE 144
Score = 80.2 bits (189), Expect = 1e-15
Identities = 37/50 (74%), Positives = 42/50 (84%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 655
GSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPTRELA QIQQ A+ F
Sbjct: 146 GSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKF 195
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 96.7 bits (230), Expect = 1e-20
Identities = 39/96 (40%), Positives = 64/96 (66%)
Frame = +1
Query: 217 PRLGFCFAPTFQQNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 396
P+ F F++NFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 397 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 504
+ + + +G+ EPTPIQAQGWP+A+ G++L+G+A+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAE 210
Score = 72.1 bits (169), Expect = 3e-13
Identities = 32/50 (64%), Positives = 41/50 (82%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 655
GSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + F
Sbjct: 212 GSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKF 261
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 96.7 bits (230), Expect = 1e-20
Identities = 39/96 (40%), Positives = 64/96 (66%)
Frame = +1
Query: 217 PRLGFCFAPTFQQNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 396
P+ F F++NFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 397 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 504
+ + + +G+ EPTPIQAQGWP+A+ G++L+G+A+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAE 210
Score = 72.1 bits (169), Expect = 3e-13
Identities = 32/50 (64%), Positives = 41/50 (82%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 655
GSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + F
Sbjct: 212 GSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKF 261
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 77.0 bits (181), Expect = 1e-14
Identities = 35/79 (44%), Positives = 47/79 (59%)
Frame = +1
Query: 268 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 447
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 448 QAQGWPIAMSGKNLVGVAK 504
QAQ WPIAM G+++V +AK
Sbjct: 185 QAQSWPIAMQGRDIVAIAK 203
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/50 (52%), Positives = 32/50 (64%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 655
GSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A F
Sbjct: 205 GSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKF 253
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 77.0 bits (181), Expect = 1e-14
Identities = 35/79 (44%), Positives = 47/79 (59%)
Frame = +1
Query: 268 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 447
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 448 QAQGWPIAMSGKNLVGVAK 504
QAQ WPIAM G+++V +AK
Sbjct: 185 QAQSWPIAMQGRDIVAIAK 203
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/50 (52%), Positives = 32/50 (64%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 655
GSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A F
Sbjct: 205 GSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKF 253
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 77.0 bits (181), Expect = 1e-14
Identities = 35/79 (44%), Positives = 47/79 (59%)
Frame = +1
Query: 268 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 447
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 448 QAQGWPIAMSGKNLVGVAK 504
QAQ WPIAM G+++V +AK
Sbjct: 185 QAQSWPIAMQGRDIVAIAK 203
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/50 (52%), Positives = 32/50 (64%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 655
GSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A F
Sbjct: 205 GSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKF 253
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 71.7 bits (168), Expect = 4e-13
Identities = 28/84 (33%), Positives = 50/84 (59%)
Frame = +1
Query: 253 QNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYK 432
++FY+ ++ + E +YR + VSG +VH P++ FE+ F + +K Y+
Sbjct: 190 KDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAYE 249
Query: 433 EPTPIQAQGWPIAMSGKNLVGVAK 504
+PT IQ Q PI +SG++++G+AK
Sbjct: 250 KPTAIQCQALPIVLSGRDVIGIAK 273
Score = 63.7 bits (148), Expect = 1e-10
Identities = 29/50 (58%), Positives = 37/50 (74%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 655
GSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA QI A F
Sbjct: 275 GSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKF 324
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 69.3 bits (162), Expect = 2e-12
Identities = 29/43 (67%), Positives = 35/43 (81%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 634
GSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI
Sbjct: 443 GSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQI 485
Score = 66.9 bits (156), Expect = 1e-11
Identities = 31/86 (36%), Positives = 49/86 (56%)
Frame = +1
Query: 247 FQQNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 426
F++NFY + + + V YR E+ V G +V PIQ++ + + +K +
Sbjct: 356 FRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKKLN 415
Query: 427 YKEPTPIQAQGWPIAMSGKNLVGVAK 504
Y++P PIQAQ PI MSG++ +GVAK
Sbjct: 416 YEKPMPIQAQALPIIMSGRDCIGVAK 441
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 69.3 bits (162), Expect = 2e-12
Identities = 29/43 (67%), Positives = 35/43 (81%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 634
GSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI
Sbjct: 576 GSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQI 618
Score = 66.5 bits (155), Expect = 1e-11
Identities = 30/86 (34%), Positives = 49/86 (56%)
Frame = +1
Query: 247 FQQNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 426
F++NFY + + + EV YR E+ V G +V PI+++ + + +K +
Sbjct: 489 FRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLN 548
Query: 427 YKEPTPIQAQGWPIAMSGKNLVGVAK 504
Y++P PIQ Q PI MSG++ +GVAK
Sbjct: 549 YEKPMPIQTQALPIIMSGRDCIGVAK 574
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 66.5 bits (155), Expect = 1e-11
Identities = 31/77 (40%), Positives = 45/77 (58%)
Frame = +1
Query: 274 PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQA 453
P V SP E+ YR HEVT +G + P FE + P + + + + G+ PTPIQA
Sbjct: 406 PDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELLSAGFPSPTPIQA 463
Query: 454 QGWPIAMSGKNLVGVAK 504
Q WPIA+ +++V +AK
Sbjct: 464 QTWPIALQSRDIVAIAK 480
Score = 50.0 bits (114), Expect = 1e-06
Identities = 26/50 (52%), Positives = 33/50 (66%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 655
GSGKTL Y++PA + + + R +GP L+LAPTRELA QIQ A F
Sbjct: 482 GSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRF 530
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 60.9 bits (141), Expect = 7e-10
Identities = 27/81 (33%), Positives = 48/81 (59%)
Frame = +1
Query: 259 FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 438
++ P V K S +++ R +TV+G ++ PI+ F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 439 TPIQAQGWPIAMSGKNLVGVA 501
TPIQ QG P+ +SG++++G+A
Sbjct: 121 TPIQVQGLPVVLSGRDMIGIA 141
Score = 52.0 bits (119), Expect = 3e-07
Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQIQQVAADF 655
GSGKTL ++LP I+ + PI G+GPIALV+ P+RELA+Q V F
Sbjct: 144 GSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQF 196
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 3/53 (5%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQVAADF 655
GSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++ F
Sbjct: 360 GSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKF 412
Score = 45.6 bits (103), Expect = 3e-05
Identities = 16/64 (25%), Positives = 38/64 (59%)
Frame = +1
Query: 313 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 492
+R + ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 493 GVAK 504
G+A+
Sbjct: 355 GIAE 358
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 56.0 bits (129), Expect = 2e-08
Identities = 25/80 (31%), Positives = 46/80 (57%)
Frame = +1
Query: 262 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 441
+ P + K S + + R + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 442 PIQAQGWPIAMSGKNLVGVA 501
PIQ QG P+ ++G++++G+A
Sbjct: 171 PIQVQGLPVILAGRDMIGIA 190
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQIQQVAADF 655
GSGKTL ++LP I+ + PI G+GPI L++ P+RELA+Q +V F
Sbjct: 193 GSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQF 245
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 50.0 bits (114), Expect = 1e-06
Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = +2
Query: 500 PNGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQ 640
P G+GKT+AY+ P I H+ + P + R G ALV+ PTREL Q+ +
Sbjct: 75 PTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYE 122
Score = 29.5 bits (63), Expect = 2.0
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +1
Query: 421 MGYKEPTPIQAQGWPIAMSGKNLV 492
MG++ PT +QAQ P+ +SG++++
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVL 71
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 48.4 bits (110), Expect = 4e-06
Identities = 26/50 (52%), Positives = 31/50 (62%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 655
GSGKTL Y++P +H+ R GP LVL+PTRELA QIQ A F
Sbjct: 276 GSGKTLGYLIPGFMHLQRIHNDSRM-GPTILVLSPTRELATQIQVEALKF 324
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = +1
Query: 412 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 504
V + G+ P+PIQAQ WPIAM +++V +AK
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAK 274
Score = 31.1 bits (67), Expect = 0.67
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 307 EEYRNNHEVTVSGVEVHNPIQYFEEANFPD 396
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Frame = +1
Query: 301 EVEEYRNNHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 474
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 475 SGKNLVGVAK 504
G++L+G+AK
Sbjct: 150 DGRDLIGIAK 159
Score = 44.4 bits (100), Expect = 7e-05
Identities = 26/50 (52%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIQQV 643
GSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI V
Sbjct: 161 GSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDV 210
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 44.0 bits (99), Expect = 9e-05
Identities = 23/56 (41%), Positives = 33/56 (58%)
Frame = +1
Query: 334 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVA 501
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L A
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASA 211
Score = 37.1 bits (82), Expect = 0.010
Identities = 25/61 (40%), Positives = 32/61 (52%)
Frame = +2
Query: 461 GR*LCLERI*LA*PNGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 640
GR LC I GSGKT A+ LP + + +P +R L+L PTRELA QI
Sbjct: 204 GRDLCASAI-----TGSGKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQIHS 256
Query: 641 V 643
+
Sbjct: 257 M 257
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/55 (49%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPTRELAQQIQQVAADF 655
G GKTLA++LP + + N P + G P LVL PTRELA +QVAADF
Sbjct: 143 GQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELA---KQVAADF 194
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQ 640
G+GKTLA+ +P I I RG P+ LVLAPTRELA+Q+++
Sbjct: 151 GTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEK 196
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +1
Query: 316 RNNHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 483
R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 484 NLVGVA 501
A
Sbjct: 180 ECFACA 185
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +2
Query: 500 PNGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 631
P GSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 186 PTGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADF 655
GSGKT A+ P I I ++R G P+A++L+PTRELA QI A F
Sbjct: 206 GSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKF 260
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +1
Query: 247 FQQNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTM 423
F+ + +P P ++ + + + + SG V P+ F E + + + ++
Sbjct: 118 FENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNIRRC 177
Query: 424 GYKEPTPIQAQGWPIAMSGKNLVGVAK 504
Y +PTP+Q PI + G++L+ A+
Sbjct: 178 KYVKPTPVQRHAIPILLEGRDLMACAQ 204
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 631
G+GKT+A++LPAI + PP R I LV+ PTRELA Q
Sbjct: 429 GTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQ 473
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 3/53 (5%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 655
GSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA F
Sbjct: 63 GSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVAEPF 113
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 41.5 bits (93), Expect = 5e-04
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINN-QPPIRRGDGPIALVLAPTRELAQQIQQ 640
G+GKTLA+ +P I I RG P LVLAPTRELA+Q+++
Sbjct: 163 GTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEK 208
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 41.1 bits (92), Expect = 6e-04
Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADF 655
GSGKT A+ P I I I R G P+A++L+PTRELA QI A F
Sbjct: 193 GSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKF 247
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +1
Query: 331 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 504
+ SG V P+ F E + + + ++ Y +PTP+Q PI +G++L+ A+
Sbjct: 134 IETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQ 191
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 41.1 bits (92), Expect = 6e-04
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +1
Query: 292 SPYEVEEYRNNHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 465
S ++ + R ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 466 IAMSGKNLVGVA 501
A++GK+L+ A
Sbjct: 143 AALTGKSLLASA 154
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVA 646
GSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A
Sbjct: 157 GSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQA 206
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQQI 634
GSGKTLAY+LP + + + + ++ P A +L P+REL QQ+
Sbjct: 93 GSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
Score = 37.1 bits (82), Expect = 0.010
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = +1
Query: 301 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 480
EVEE RN+ E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 481 KNLVGVAK 504
K++V AK
Sbjct: 84 KDVVARAK 91
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 5/52 (9%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVA 646
GSGKTLAY+LP IV + + G P +VL PTREL++Q+ +VA
Sbjct: 159 GSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVA 209
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +1
Query: 373 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 504
FE N V +K GYK PTPIQ + P+ +SG ++V +A+
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMAR 73
Score = 37.1 bits (82), Expect = 0.010
Identities = 19/42 (45%), Positives = 29/42 (69%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 631
GSGKT A+++P + + P +G G AL+L+PTR+LA+Q
Sbjct: 75 GSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLAEQ 113
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 3/50 (6%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVA 646
GSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA
Sbjct: 64 GSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVA 111
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADF 655
GSGKT A+ P I I + R G P A++L+PTRELA QI A F
Sbjct: 198 GSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKF 252
Score = 36.3 bits (80), Expect = 0.018
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +1
Query: 331 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 504
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+ A+
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQ 196
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADF 655
GSGKT A+ P I I + R G P A++L+PTRELA QI A F
Sbjct: 198 GSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKF 252
Score = 36.3 bits (80), Expect = 0.018
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +1
Query: 331 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 504
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+ A+
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQ 196
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVA 646
GSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A
Sbjct: 20 GSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQA 69
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGD--GPI-ALVLAPTRELAQQ 631
G+GKT+A++LP+I + PP + PI ALV+ PTRELA Q
Sbjct: 101 GTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQ 145
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/48 (50%), Positives = 31/48 (64%)
Frame = +2
Query: 500 PNGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 643
P GSGKTL+Y LP IV + P+R ALV+ PTR+LA Q++ V
Sbjct: 70 PTGSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRDLALQVKDV 113
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 631
G+GKT+A++LP+I + PP R + I LV+ PTRELA Q
Sbjct: 127 GTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +1
Query: 373 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 504
F++ +G++ G+K T +Q P+ + GK+++ AK
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAK 125
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +2
Query: 506 GSGKTLAYILPAI-VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 652
GSGKTLA+++PA+ + + R G G +V+ PTRELA Q + VA +
Sbjct: 136 GSGKTLAFLIPAVELLFKERFSPRNGTG--VIVICPTRELAIQTKNVAEE 183
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/67 (20%), Positives = 32/67 (47%)
Frame = +1
Query: 304 VEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 483
+E+ + + + G + + F+ + + +K MG++ T IQA + GK
Sbjct: 69 MEDGEDEKNIVIVGKGIMTNVT-FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGK 127
Query: 484 NLVGVAK 504
+++G A+
Sbjct: 128 DVLGAAR 134
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 38.3 bits (85), Expect = 0.004
Identities = 15/52 (28%), Positives = 32/52 (61%)
Frame = +1
Query: 349 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 504
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++G+A+
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQ 54
Score = 30.7 bits (66), Expect = 0.88
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHI-----NNQPPIRRGDGP--IALVLAPTRELAQQIQQ 640
GSGKT A+ +P + + +++P R P A VL+PTRELA QI +
Sbjct: 56 GSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAE 107
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 37.9 bits (84), Expect = 0.006
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 5/50 (10%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQP----PIRR-GDGPIALVLAPTRELAQQIQQ 640
G+GKTLA+ +P I + + RR G P LVLAPTRELA+Q+++
Sbjct: 149 GTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEK 198
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/49 (44%), Positives = 30/49 (61%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 652
GSGKTLA+++PA V + + +G LV+ PTRELA Q VA +
Sbjct: 201 GSGKTLAFLIPA-VELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKE 248
Score = 35.5 bits (78), Expect = 0.031
Identities = 20/76 (26%), Positives = 36/76 (47%)
Frame = +1
Query: 277 TVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 456
T K EVE+ ++ + + + FE + D + +K MG+ T IQA+
Sbjct: 127 TEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKEMGFARMTQIQAK 183
Query: 457 GWPIAMSGKNLVGVAK 504
P M G++++G A+
Sbjct: 184 AIPPLMMGEDVLGAAR 199
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 37.1 bits (82), Expect = 0.010
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELAQQIQQVAADF 655
GSGKTLA+++P + + PP + + ++++PTREL+ QI VA F
Sbjct: 63 GSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELSTQIYNVAQPF 113
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 37.1 bits (82), Expect = 0.010
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Frame = +2
Query: 491 LA*PNGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELAQQI 634
+A +GSGKTLAY++P I + Q + G P +VL PT ELA Q+
Sbjct: 416 IADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQV 467
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 37.1 bits (82), Expect = 0.010
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQI 634
G+GK++A++LPAI + N+ + + AL+L PTRELA QI
Sbjct: 375 GTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQI 421
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/54 (38%), Positives = 32/54 (59%)
Frame = +2
Query: 470 LCLERI*LA*PNGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 631
LC I A GSGKTLA+++P + ++ + DG ++++PTRELA Q
Sbjct: 106 LCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPTRELAAQ 158
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 35.5 bits (78), Expect = 0.031
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +2
Query: 503 NGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 643
NGSGKT ++L + ++ P +R P AL + PTRELA Q +V
Sbjct: 140 NGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEV 181
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 35.5 bits (78), Expect = 0.031
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGDGPIA----LVLAPTRELAQQI 634
G+GK++A++LPAI + +G +A L+L PTRELA QI
Sbjct: 422 GTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQI 468
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 35.5 bits (78), Expect = 0.031
Identities = 22/45 (48%), Positives = 28/45 (62%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 640
GSGKT A+ LP I+H + P G ALV+ PTRELA Q+ +
Sbjct: 105 GSGKTAAFALP-ILHRLAEDPY----GVFALVVTPTRELAFQLAE 144
Score = 33.1 bits (72), Expect = 0.17
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = +1
Query: 373 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 504
FE ++ + K +G ++PTP+Q P ++G++++G+A+
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQ 103
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 35.1 bits (77), Expect = 0.041
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +2
Query: 503 NGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 652
NG+GKT A+ +P + I+ + + A+++ PTRELA Q QV +
Sbjct: 177 NGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKE 221
Score = 34.3 bits (75), Expect = 0.072
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +1
Query: 373 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 504
FE+ + G+ G++ P+PIQ + PIA++G++++ AK
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAK 176
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 35.1 bits (77), Expect = 0.041
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +2
Query: 503 NGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 652
NG+GKT A+ +P + I+ + + A+++ PTRELA Q QV +
Sbjct: 177 NGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKE 221
Score = 34.3 bits (75), Expect = 0.072
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +1
Query: 373 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 504
FE+ + G+ G++ P+PIQ + PIA++G++++ AK
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAK 176
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 34.7 bits (76), Expect = 0.054
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = +2
Query: 503 NGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 652
NG+GKT A+ +P + I+ + + + A++L PTRELA Q QV +
Sbjct: 200 NGTGKTGAFCIPTLEKIDPENNVIQ-----AVILVPTRELALQTSQVCKE 244
Score = 33.9 bits (74), Expect = 0.095
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +1
Query: 373 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 504
FE+ + +G+ G+++P+PIQ + PIA++G +++ AK
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAK 199
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 34.3 bits (75), Expect = 0.072
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +2
Query: 503 NGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 652
NG+GKT A+ +P + I+ + + A++L PTRELA Q QV +
Sbjct: 170 NGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKE 214
Score = 33.9 bits (74), Expect = 0.095
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +1
Query: 373 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 504
FE+ + +G+ G+++P+PIQ + PIA++G +++ AK
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAK 169
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 34.3 bits (75), Expect = 0.072
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +2
Query: 503 NGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 652
NG+GKT A+ +P + I+ + + A++L PTRELA Q QV +
Sbjct: 170 NGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKE 214
Score = 33.9 bits (74), Expect = 0.095
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +1
Query: 373 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 504
FE+ + +G+ G+++P+PIQ + PIA++G +++ AK
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAK 169
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 34.3 bits (75), Expect = 0.072
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +1
Query: 361 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 504
PI+ F++ D V +GV GYK+P+ IQ + + G++++ A+
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQ 67
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 33.1 bits (72), Expect = 0.17
Identities = 20/47 (42%), Positives = 27/47 (57%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 646
GSGKTL Y+L IN Q + A+++ PTREL Q+ +VA
Sbjct: 123 GSGKTLTYLLLIFSLINPQRSSVQ-----AVIVVPTRELGMQVTKVA 164
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 32.7 bits (71), Expect = 0.22
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +2
Query: 593 ALVLAPTRELAQQIQQV 643
ALVLAPTRELAQQI++V
Sbjct: 110 ALVLAPTRELAQQIEKV 126
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 32.7 bits (71), Expect = 0.22
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +2
Query: 593 ALVLAPTRELAQQIQQV 643
ALVLAPTRELAQQI++V
Sbjct: 112 ALVLAPTRELAQQIEKV 128
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 32.7 bits (71), Expect = 0.22
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +2
Query: 593 ALVLAPTRELAQQIQQV 643
ALVLAPTRELAQQI++V
Sbjct: 110 ALVLAPTRELAQQIEKV 126
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 30.7 bits (66), Expect = 0.88
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Frame = +2
Query: 506 GSGKTLAYILPAIVHINNQPPIRRGDGP--------IALVLAPTRELAQQI 634
GSGKTLAY+LP + I R A+++AP+REL QI
Sbjct: 157 GSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQI 207
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 373 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 492
FEE PD + ++ G+ PT +Q+ P + G + V
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAV 151
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 503 NGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 634
+G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 92 SGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 503 NGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 634
+G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 9 SGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 47
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 503 NGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 634
+G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 92 SGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At3g59750.1 68416.m06666 receptor lectin kinase, putative similar
to receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733
Length = 626
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -1
Query: 184 FPTKSSRSSKSIATVAKSRRIIAEFVASSKFGTTVSTAIIPVTRHDYFSDLVEDVYLNYG 5
+P KSS +K I V + + A FVAS + TRH +++E+ + YG
Sbjct: 235 YPKKSSDRTKKILAVCLTLAVFAVFVAS-------GICFVFYTRHKKVKEVLEEWEIQYG 287
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 633 ICCANSLVGAKTKAIGPSPLRI 568
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 28.3 bits (60), Expect = 4.7
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -3
Query: 131 EKNYRRICCLLQIWNHRFHGYY 66
E+ + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
>At5g16590.1 68418.m01942 leucine-rich repeat transmembrane protein
kinase, putative
Length = 625
Score = 27.5 bits (58), Expect = 8.2
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = -2
Query: 588 GPSPLRIGGWLFMCTMAGKM*ANVLPDPFGYAN*ILSRHSYRPALSLNGRRFFVTHCLYT 409
GP P+ IG + T++ + A P P +AN L R+ Y + +G + L+T
Sbjct: 77 GPLPIAIGNLTKLETLSFRFNALNGPLPPDFANLTLLRYLYLQGNAFSGE---IPSFLFT 133
Query: 408 LLHIIR 391
L +IIR
Sbjct: 134 LPNIIR 139
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 262 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 438
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 439 TPIQAQGWPIAMS 477
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 262 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 438
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 439 TPIQAQGWPIAMS 477
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 262 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 438
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 439 TPIQAQGWPIAMS 477
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,216,908
Number of Sequences: 28952
Number of extensions: 277914
Number of successful extensions: 1014
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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