Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0346
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    31   0.086
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc...    29   0.46 
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   2.5  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   4.3  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   5.7  
SPBC3H7.08c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.5  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    25   9.9  

>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 31.5 bits (68), Expect = 0.086
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -3

Query: 307 YLICCL*FVAPQSFSYSTARGHTLL 233
           +L CCL F    SF+ +TA+GH+L+
Sbjct: 94  FLSCCLRFTVSLSFTMNTAQGHSLI 118


>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 81  DHLKTGGDWTEFFNKDPRDMVS-GLSKDINVDNIVGGEXVMWTEVVNDMNIMSR 239
           DHLK G  W +   +D  D+VS G + D    + +  + +    + +D N++S+
Sbjct: 419 DHLKFGRSWCDMDEEDEEDIVSFGSNDDFGASDELSSKHI---GLADDWNVLSQ 469


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +3

Query: 9   KRIYEMLNILRASHQLIYSSGWYLDHLKTGGDWTEFFNKDPRDMVSGL 152
           + +Y  ++ +R  H L  S GW  DH+    D   F +  P     GL
Sbjct: 567 RNVYRNIHSIRR-HYLSLSEGWRFDHIANWTDDVYFPDSQPYASPMGL 613


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -3

Query: 262 YSTARGHTLLIMFMSLTTSVHMTX-SPPTMLSTLMSLLRPLTISRGSLLKNSVQSPP 95
           +ST+ G+T     +    S +      PT+LST  SL RP      +L+  S + PP
Sbjct: 482 FSTSSGNTRKTSLLGSNHSSYSDKLGSPTILSTSFSLARP--YPEPALVSPSTERPP 536


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 33   ILRASHQLIYSSGWYLDHLKTGGDWTEFF 119
            +  A H L++     LD+ +  GDW   F
Sbjct: 2152 LFAAEHMLVFFQNCKLDYYRYVGDWVRHF 2180


>SPBC3H7.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 120

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 121 LKNSVQSPPVFRWSRYQPEE*INW*LALRIFNIS 20
           +  S+ S  + RWSR  PE  I W +    F ++
Sbjct: 3   IMRSIMSNRLVRWSREYPELFITWCVMTYTFGVA 36


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 311 SILDMLPVIRGPTVFQLQHSSW 246
           +I D+  + R P ++ +QHS+W
Sbjct: 29  AIYDVQKLNREPIIYDVQHSAW 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,222,151
Number of Sequences: 5004
Number of extensions: 42206
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)