Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0346
(555 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0121 - 833885-833949,834180-834430,834545-834604,834893-83... 50 2e-06
07_03_1000 - 23220878-23221821,23222164-23223001 40 0.001
03_02_0187 - 6248226-6249226,6249296-6250148 39 0.003
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 29 2.5
08_02_0204 - 14253258-14253383,14253685-14253878,14254029-142547... 28 4.4
06_03_0181 + 17618888-17619125,17621503-17621683,17621765-176219... 28 5.8
08_02_1340 - 26256768-26256999,26258105-26258774,26259273-262605... 27 7.6
05_01_0327 - 2565574-2565654,2566037-2566099,2566511-2566591,256... 27 7.6
04_04_0783 - 28040828-28041615,28041942-28043589 27 7.6
>05_01_0121 -
833885-833949,834180-834430,834545-834604,834893-834926,
835746-835805,836409-836509,836939-837039,837209-837289,
837580-837650,837738-837849,838138-838173,838865-838951,
839055-839396
Length = 466
Score = 49.6 bits (113), Expect = 2e-06
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +3
Query: 72 WYLDHLKTGGDWTEFFNKDPRDMVSGLSKDINVDNIVGGEXVMWTEVVNDMNIMSRVWPR 251
WYLDHL W +F+ +P ++G++ ++GGE MW E + ++ +WPR
Sbjct: 386 WYLDHLDV--PWQDFYTSEP---LAGINNTAQQKLVLGGEVCMWGETADTSDVQQTIWPR 440
Query: 252 A 254
A
Sbjct: 441 A 441
>07_03_1000 - 23220878-23221821,23222164-23223001
Length = 593
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +3
Query: 81 DHLKTGGDWTEFFNKDPR----DMVSGLSKDINVDNIVGGEXVMWTEVVNDMNIMSRVWP 248
D+ +GG W + R D+ GL+ + +VGGE MWTE V+ + RVWP
Sbjct: 473 DYGTSGGSWCGPYKTWQRVYDYDVAGGLTAE-EARLVVGGEVAMWTEQVDAAVLDGRVWP 531
Query: 249 RA 254
RA
Sbjct: 532 RA 533
>03_02_0187 - 6248226-6249226,6249296-6250148
Length = 617
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = +3
Query: 93 TGGDWTEFFNKDPR----DMVSGLSKDINVDNIVGGEXVMWTEVVNDMNIMSRVWPRA 254
TGG W F R D++ GL+ D ++GGE +W+E ++ + +R+WPRA
Sbjct: 501 TGGSWCAPFKTWQRVYDYDILHGLTDD-EAQLVLGGEVALWSEQSDETVLDARLWPRA 557
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 357 RMPRAFILHVCSSKREYT*YAACDSWPHS 271
R R LH+C SK Y Y+ DSW +S
Sbjct: 3014 RYARRLFLHLCGSKTHY--YSVRDSWQYS 3040
>08_02_0204 - 14253258-14253383,14253685-14253878,14254029-14254743,
14254811-14254837,14258779-14258838,14263174-14264844,
14267402-14267518,14267593-14267763,14270248-14270346,
14271684-14271770,14272392-14272475,14272929-14273068,
14274414-14274494,14275492-14275680,14275986-14276022
Length = 1265
Score = 28.3 bits (60), Expect = 4.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 145 LTISRGSLLKNSVQSPPVFRWSRYQ 71
+ +SR + +QSPP +RW++ Q
Sbjct: 1131 MALSRTQAMPTQMQSPPTYRWTQVQ 1155
>06_03_0181 +
17618888-17619125,17621503-17621683,17621765-17621906,
17622002-17622071,17622162-17622307,17623382-17623948,
17624558-17624641,17624723-17624797,17625049-17625217,
17625395-17625586,17625662-17626053
Length = 751
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Frame = -2
Query: 371 WVAGRVCRARSFCMCA----PLSESILDMLPVIRGPTVFQLQHSSWPYSAHNVHVVNN 210
WVA VC A S +C P S D +F + WP S H++ V N+
Sbjct: 556 WVASYVCLAISGAICVRYVLPQKHSFCDF------DMIFTFVFAGWPGSVHDMRVFND 607
>08_02_1340 -
26256768-26256999,26258105-26258774,26259273-26260555,
26262403-26263499
Length = 1093
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 292 GSISSILSLRGAHMQNERARHTRPATQWPWLLPR 393
G +S+ ++ G + RA RPA W WL+P+
Sbjct: 235 GLATSLAAVEGRRLGAARAGR-RPAMSWAWLVPQ 267
>05_01_0327 -
2565574-2565654,2566037-2566099,2566511-2566591,
2566710-2566787,2566892-2566984,2567108-2567225,
2567568-2567695,2567808-2568083,2568763-2568917,
2568997-2569140,2569427-2569844
Length = 544
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 451 CNCNISTGLIQNFFNIPSTVQILVIPKIGDIVK 549
C CNI GLI +I S + L + ++GDI++
Sbjct: 401 CKCNIDDGLIVEEVSIGSCAERLGV-RVGDIIE 432
>04_04_0783 - 28040828-28041615,28041942-28043589
Length = 811
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = -3
Query: 268 FSYSTARGHTLLIMFMSLTTSVHMTXSPPT-MLSTLMSLLRPLTISRGSLLKNSVQS 101
+SY+T G LL+ ++ + + +PPT +S+++ +LR + +G + + +QS
Sbjct: 509 YSYATVAGGPLLMALVAGEAAHNFETTPPTDAVSSVLKILRGIYEPQGIEVPDPLQS 565
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,344,235
Number of Sequences: 37544
Number of extensions: 274524
Number of successful extensions: 643
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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