Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0346
         (555 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19048| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   5e-09
SB_41834| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)              43   1e-04
SB_50531| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)             28   5.9  
SB_28528| Best HMM Match : TUDOR (HMM E-Value=0.34)                    27   7.8  
SB_9053| Best HMM Match : TIG (HMM E-Value=0)                          27   7.8  
SB_7527| Best HMM Match : DSL (HMM E-Value=2.5e-34)                    27   7.8  
SB_32671| Best HMM Match : SerH (HMM E-Value=0.4)                      27   7.8  

>SB_19048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 25/67 (37%), Positives = 38/67 (56%)
 Frame = +3

Query: 57  IYSSGWYLDHLKTGGDWTEFFNKDPRDMVSGLSKDINVDNIVGGEXVMWTEVVNDMNIMS 236
           I SS WYL+++  G DW  ++  +P D       D   + ++GG   MW E V+  NI++
Sbjct: 517 ILSSPWYLNYISYGIDWPNYYKVEPTDFEG---TDQEKELVIGGTGCMWGEFVDGTNILA 573

Query: 237 RVWPRAV 257
           R WPRA+
Sbjct: 574 RTWPRAL 580


>SB_41834| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
          Length = 296

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 22/83 (26%), Positives = 42/83 (50%)
 Frame = +3

Query: 3   EGKRIYEMLNILRASHQLIYSSGWYLDHLKTGGDWTEFFNKDPRDMVSGLSKDINVDNIV 182
           EG +   ++   +  +Q + S+G+Y+D +++       +  DP  + +          ++
Sbjct: 198 EGLKESTLIEAAKKGYQSVLSNGYYIDRMQSV---VHHYKVDP--IGNAKLTPAQRARVL 252

Query: 183 GGEXVMWTEVVNDMNIMSRVWPR 251
           GGE  MW E+V  + I SR+WPR
Sbjct: 253 GGEATMWGELVTPLTIDSRIWPR 275


>SB_50531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -2

Query: 302 DMLPVIRGPTVFQLQHSSWPYSAHNV--HVVNNFCPHDXFATYNVVNIDVFAEAADHI 135
           D+ P +       + +  +P+ ++N   HV N+  PH    TY  ++ID++   ++ I
Sbjct: 52  DIFPQVSNDIYPHVSNDIYPHVSNNTYPHVSNDIYPHVSHDTYLHLSIDIYPHVSNDI 109


>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1383

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 326 APLSESILDMLPVI-RGPTVFQLQHSSWPYSAHNVHVVNNFCPHD 195
           AP ++S+ D++    R   V +LQ     +SA N   + NFC H+
Sbjct: 543 APANQSVEDIMKSKPRRRQVVELQEFPIGFSAQNYQSMENFCQHE 587


>SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)
          Length = 2822

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 439  FNKRCNCNISTGLIQN 486
            F KRC CN   G+IQN
Sbjct: 2784 FKKRCKCNDKKGIIQN 2799


>SB_28528| Best HMM Match : TUDOR (HMM E-Value=0.34)
          Length = 736

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/60 (23%), Positives = 27/60 (45%)
 Frame = -3

Query: 229 MFMSLTTSVHMTXSPPTMLSTLMSLLRPLTISRGSLLKNSVQSPPVFRWSRYQPEE*INW 50
           + + + TS+      P  + T+ + L  L  ++G   KN+V    V  WS  + ++   W
Sbjct: 454 LHIDVRTSIAQVHVSPATIKTMTACLMSLAPAQGQSDKNNVIDDDVTLWSEKEIDKKSKW 513


>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
          Length = 2990

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 241  YGHELCCS*KTVGPRITGSISSILSLRGAHMQNERARHTRPA 366
            YGH+LC      G ++       L L G H+Q    R ++ A
Sbjct: 1884 YGHQLCTELPVYGCKVIAVRKGTLDLHGRHVQYTWTRLSQTA 1925


>SB_7527| Best HMM Match : DSL (HMM E-Value=2.5e-34)
          Length = 542

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 105 NRLQFSDGQGTSQRNRLTGDLLLGYSTFRKFVSL 4
           N L+FS G     +NR    L  G+S ++ F+S+
Sbjct: 147 NLLEFSVGDALDDQNRQRNPLAFGFSRWKGFLSV 180


>SB_32671| Best HMM Match : SerH (HMM E-Value=0.4)
          Length = 406

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 20/58 (34%), Positives = 31/58 (53%)
 Frame = -3

Query: 271 SFSYSTARGHTLLIMFMSLTTSVHMTXSPPTMLSTLMSLLRPLTISRGSLLKNSVQSP 98
           +F+ +T R  T  +MF+  T+S+  + + PT LST   +  P T    S LK S  +P
Sbjct: 109 TFAQAT-RAFTTSLMFLPRTSSLKASSNTPTALSTTSLMSLPST----SNLKASSNTP 161


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,389,344
Number of Sequences: 59808
Number of extensions: 311003
Number of successful extensions: 728
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)