Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0346
         (555 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50199-3|AAA91263.1|  555|Caenorhabditis elegans Hypothetical pr...    48   5e-06
AM748820-1|CAO72174.1|  555|Caenorhabditis elegans hexosaminidas...    48   5e-06
Z93390-5|CAJ76954.1|  219|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z93390-4|CAJ76953.1|  347|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z93390-3|CAB07676.1|  680|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AF063007-2|AAC16433.1|  583|Caenorhabditis elegans Hypothetical ...    27   6.9  

>U50199-3|AAA91263.1|  555|Caenorhabditis elegans Hypothetical
           protein T14F9.3 protein.
          Length = 555

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
 Frame = +3

Query: 9   KRIYEML-NILRASHQLIYSSGWYLDHLKTGGDWT-EFFNKDPRDMVSGLSKDINVDNIV 182
           + IYE + NI   +  +I S+ WYL+++K G DW  E     P +         N +  V
Sbjct: 404 EEIYEQVKNITSQNFPVIVSACWYLNYIKYGADWRDEIRGTAPSNSRYYYCDPTNFNGTV 463

Query: 183 -------GGEXVMWTEVVNDMNIMSRVWPRA 254
                  GG   +W E+V++ NI +R+WPRA
Sbjct: 464 AQKELVWGGIAAIWGELVDNTNIEARLWPRA 494



 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +2

Query: 257 AVAERLWG--HESQAAYQVYSRLEEHTCRMNARGIRAQPPSGPGFC 388
           A AERLW    ++Q A   + R+ E  CR+ +RG R QP + P +C
Sbjct: 496 AAAERLWSPAEKTQRAEDAWPRMHELRCRLVSRGYRIQPNNNPDYC 541


>AM748820-1|CAO72174.1|  555|Caenorhabditis elegans hexosaminidase
           protein.
          Length = 555

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
 Frame = +3

Query: 9   KRIYEML-NILRASHQLIYSSGWYLDHLKTGGDWT-EFFNKDPRDMVSGLSKDINVDNIV 182
           + IYE + NI   +  +I S+ WYL+++K G DW  E     P +         N +  V
Sbjct: 404 EEIYEQVKNITSQNFPVIVSACWYLNYIKYGADWRDEIRGTAPSNSRYYYCDPTNFNGTV 463

Query: 183 -------GGEXVMWTEVVNDMNIMSRVWPRA 254
                  GG   +W E+V++ NI +R+WPRA
Sbjct: 464 AQKELVWGGIAAIWGELVDNTNIEARLWPRA 494



 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +2

Query: 257 AVAERLWG--HESQAAYQVYSRLEEHTCRMNARGIRAQPPSGPGFC 388
           A AERLW    ++Q A   + R+ E  CR+ +RG R QP + P +C
Sbjct: 496 AAAERLWSPAEKTQRAEDAWPRMHELRCRLVSRGYRIQPNNNPDYC 541


>Z93390-5|CAJ76954.1|  219|Caenorhabditis elegans Hypothetical
           protein T23B5.1c protein.
          Length = 219

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -2

Query: 224 HVVNNFCPHDXFATYNVV-NIDVFAEAADHIPRVLVEKFRPIASSFQMVKV 75
           H++ NFC +D          I+ F    DH+ +++  KFR +   F   +V
Sbjct: 37  HLITNFCRYDGTLDQETFFRIEEFVGFRDHVQKIVPTKFRILGHLFYSDRV 87


>Z93390-4|CAJ76953.1|  347|Caenorhabditis elegans Hypothetical
           protein T23B5.1b protein.
          Length = 347

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -2

Query: 224 HVVNNFCPHDXFATYNVV-NIDVFAEAADHIPRVLVEKFRPIASSFQMVKV 75
           H++ NFC +D          I+ F    DH+ +++  KFR +   F   +V
Sbjct: 165 HLITNFCRYDGTLDQETFFRIEEFVGFRDHVQKIVPTKFRILGHLFYSDRV 215


>Z93390-3|CAB07676.1|  680|Caenorhabditis elegans Hypothetical
           protein T23B5.1a protein.
          Length = 680

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -2

Query: 224 HVVNNFCPHDXFATYNVV-NIDVFAEAADHIPRVLVEKFRPIASSFQMVKV 75
           H++ NFC +D          I+ F    DH+ +++  KFR +   F   +V
Sbjct: 498 HLITNFCRYDGTLDQETFFRIEEFVGFRDHVQKIVPTKFRILGHLFYSDRV 548


>Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical
           protein C05D12.2 protein.
          Length = 1052

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 33  ILRASHQLIYSSGWYLDHLKT-GGDWTEFFNKDPRDMVSGLSKDINVDNI 179
           + R   +L  S  W L  L T GG       K    +V G ++DIN DN+
Sbjct: 802 LFRIDSKLFASGVWKLSALSTTGGCQITVRQKTSIGLVLGFTEDINDDNV 851


>AF063007-2|AAC16433.1|  583|Caenorhabditis elegans Hypothetical
           protein R119.7 protein.
          Length = 583

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 260 QHSSWPYSAHNVHVVNNFCPH 198
           +HSS P  AH V  +++FCPH
Sbjct: 525 RHSSVPSIAHLVGDLSDFCPH 545


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,265,153
Number of Sequences: 27780
Number of extensions: 235941
Number of successful extensions: 604
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)