Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0346
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.68 
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          24   1.2  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.7  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   2.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   3.6  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    21   6.3  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    21   6.3  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    21   6.3  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    21   6.3  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    21   6.3  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    21   6.3  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    21   6.3  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   6.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   6.3  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   6.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   6.3  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 0.68
 Identities = 9/37 (24%), Positives = 14/37 (37%)
 Frame = -2

Query: 329 CAPLSESILDMLPVIRGPTVFQLQHSSWPYSAHNVHV 219
           C   S   +  +P ++         SSWPY  H   +
Sbjct: 149 CLVFSSGSVSCVPSVKHVAKCATDFSSWPYDTHRCRI 185


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 112 SVQSPPVFRWSRYQPE 65
           S+  PP+F W  Y PE
Sbjct: 28  SLSLPPLFGWGSYGPE 43


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 97  PVFRWSRYQPE 65
           P+F W+RY PE
Sbjct: 186 PMFGWNRYVPE 196


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
          rhodopsin protein.
          Length = 154

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 97 PVFRWSRYQPE 65
          P+F W+RY PE
Sbjct: 62 PMFGWNRYVPE 72


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +1

Query: 442 NKRCNCNI 465
           NKRCNC+I
Sbjct: 475 NKRCNCDI 482


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/39 (23%), Positives = 19/39 (48%)
 Frame = -2

Query: 278 PTVFQLQHSSWPYSAHNVHVVNNFCPHDXFATYNVVNID 162
           P +     +++ YS +N +  N    +     YN++NI+
Sbjct: 79  PKIISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIE 117


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/39 (23%), Positives = 19/39 (48%)
 Frame = -2

Query: 278 PTVFQLQHSSWPYSAHNVHVVNNFCPHDXFATYNVVNID 162
           P +     +++ YS +N +  N    +     YN++NI+
Sbjct: 79  PKIISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIE 117


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/39 (23%), Positives = 19/39 (48%)
 Frame = -2

Query: 278 PTVFQLQHSSWPYSAHNVHVVNNFCPHDXFATYNVVNID 162
           P +     +++ YS +N +  N    +     YN++NI+
Sbjct: 79  PKIISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIE 117


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/39 (23%), Positives = 19/39 (48%)
 Frame = -2

Query: 278 PTVFQLQHSSWPYSAHNVHVVNNFCPHDXFATYNVVNID 162
           P +     +++ YS +N +  N    +     YN++NI+
Sbjct: 79  PKIISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIE 117


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/39 (23%), Positives = 19/39 (48%)
 Frame = -2

Query: 278 PTVFQLQHSSWPYSAHNVHVVNNFCPHDXFATYNVVNID 162
           P +     +++ YS +N +  N    +     YN++NI+
Sbjct: 79  PKIISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIE 117


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/39 (23%), Positives = 19/39 (48%)
 Frame = -2

Query: 278 PTVFQLQHSSWPYSAHNVHVVNNFCPHDXFATYNVVNID 162
           P +     +++ YS +N +  N    +     YN++NI+
Sbjct: 79  PKIISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIE 117


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/39 (23%), Positives = 19/39 (48%)
 Frame = -2

Query: 278 PTVFQLQHSSWPYSAHNVHVVNNFCPHDXFATYNVVNID 162
           P +     +++ YS +N +  N    +     YN++NI+
Sbjct: 79  PKIISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIE 117


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 239 SAHNVHVVNNFCPHDXFATYNVVNID 162
           S   +H  NN+  ++    YN++NI+
Sbjct: 319 SNKTIHNNNNYKNYNKKLYYNIINIE 344


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 42  ASHQLIYSSGWYLDHLKTGGDWTEFFNK 125
           ASH+++ SS  ++   K  G W   F K
Sbjct: 475 ASHEVVGSSLLFVHDTKNAGIWMIDFAK 502


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 42  ASHQLIYSSGWYLDHLKTGGDWTEFFNK 125
           ASH+++ SS  ++   K  G W   F K
Sbjct: 390 ASHEVVGSSLLFVHDTKNAGIWMIDFAK 417


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 42  ASHQLIYSSGWYLDHLKTGGDWTEFFNK 125
           ASH+++ SS  ++   K  G W   F K
Sbjct: 709 ASHEVVGSSLLFVHDTKNAGIWMIDFAK 736


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,814
Number of Sequences: 438
Number of extensions: 3156
Number of successful extensions: 22
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)