Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0343
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    29   0.053
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                28   0.092
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.6  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   8.0  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   8.0  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 28.7 bits (61), Expect = 0.053
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
 Frame = -2

Query: 570 RRLPCTRPASSRQPLAV-VAGRNSARYRW*SPFIL**KTFDS-----PVCELGMRYLSRT 409
           +++PCT+P S+ Q L V    +++    W +P +L  +T  +       C +G++Y+  T
Sbjct: 310 KKMPCTQPPSAPQNLTVNFVDQSTVFLSWNAPHMLGGRTDTTYRVVCDACSMGVKYIPNT 369


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 27.9 bits (59), Expect = 0.092
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +3

Query: 480 ATTTGTWPSSDRQRPQEAAENSLVAYKAAS 569
           +TTT   PS  RQR   AA N L+A K A+
Sbjct: 92  STTTSVTPSCRRQRYNIAAANPLLAEKLAA 121


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 413  LDKYLIPSSQTGESKVFYYKMKGDYH-RYLAE 505
            +D+ L+P SQ   + VF  +    YH R +AE
Sbjct: 924  IDRVLVPGSQQNVAGVFNLRPATTYHLRIVAE 955


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = +2

Query: 188 ITQRVRQ*ADSGGEEPAV--GRLQDVIGARRASWRIISSIEQKEETKGXEDKLNMIRAYR 361
           + +R ++  D   EE  V  GR    +GA  A+   +  +++ ++  G +D  + + A  
Sbjct: 350 LIERPKKDEDEEEEEEVVVVGRNGAGVGAMNANGEAVGEVDEDDDDDGDDDDDDDVEAAN 409

Query: 362 SQ-VEXELRDI 391
            +  E  L D+
Sbjct: 410 GKPAEGMLTDV 420


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 507  SDRQRPQEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFY 644
            ++ QRP     N      ++S+I +T  PP   +R G    F+V Y
Sbjct: 1001 TEPQRPAGPPINLEARALSSSEILITWSPPLPELRHGDIQGFNVGY 1046


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 507  SDRQRPQEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFY 644
            ++ QRP     N      ++S+I +T  PP   +R G    F+V Y
Sbjct: 997  TEPQRPAGPPINLEARALSSSEILITWSPPLPELRHGDIQGFNVGY 1042


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 551 DQRVLGSLLRSLPVGTRPGTGGS 483
           DQ +LGS+ RSL +  R   G +
Sbjct: 7   DQSLLGSIARSLSLDRRARRGAA 29


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 180 NVASRNVSDNELTVEERNLLSVAYKT 257
           NVAS   S+N+ T  E  L  VA  T
Sbjct: 258 NVASLRSSENQNTSAECKLAKVALMT 283


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 180 NVASRNVSDNELTVEERNLLSVAYKT 257
           NVAS   S+N+ T  E  L  VA  T
Sbjct: 8   NVASLRSSENQNTSAECKLAKVALMT 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,702
Number of Sequences: 438
Number of extensions: 3225
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)