Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0342
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   3.5  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    27   3.5  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    26   6.1  
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet...    25   8.0  

>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -2

Query: 148  SLYTVKDACISDACCTSVLVRQVSGRHLAHTFCTRPRRLPEVSSSSN 8
            S  T K   +   CC S  V +V G + +  F    + + E+ SSSN
Sbjct: 1174 SSLTAKITQLDILCCMSDFVSRVEGENTSKIFTEISKFVREIISSSN 1220


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = -1

Query: 386 YARCVQHDKVCLAFCLHDTS---LTTYINFHKLNIYIYQPNLV*FK 258
           + RCV + KVC+A  + D     L +++N  K ++ + + +L+  K
Sbjct: 240 HRRCVVYMKVCVAVYVFDRGCRMLRSFLNRSKFDVVLVEDDLIYMK 285


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 374 VQHDKVCLAFCLHDTSLTTYINFHKLNIYIYQ 279
           V++ KV + FC    S   Y+ F  L +YIY+
Sbjct: 146 VRNRKVIIRFCEQGYSFFYYLCFWFLGLYIYR 177


>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
           acetyltransferase subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 91  VRQVSGRHLAHTFCTRPRRLPEVSSSSNVC 2
           VR  SG  +    C +P R P ++ + NVC
Sbjct: 78  VRTASGIAVVAVMC-KPHRCPHIAMTGNVC 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,091
Number of Sequences: 5004
Number of extensions: 50166
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)