Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0342
         (707 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)                       29   4.9  

>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1864

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 9   LEDDDTSGSLRGLVQNVCAKCLPETCRTNTDVQHAS 116
           LE  D   +   LVQ +C   LP T +++T+  H S
Sbjct: 434 LEIRDGQDARAALVQRICGSALPATIKSSTESLHLS 469


>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
          Length = 1327

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 21/68 (30%), Positives = 34/68 (50%)
 Frame = +1

Query: 13  KMMTLPAVCGV*YKMYAPSAFRKLAGPTLTYNMRPRYKHPLLCREKLR*SI*RNIYMLKR 192
           K++   AVC + Y+ +  SA    AG ++   +RP  K PL  R  L        +++K 
Sbjct: 613 KIILYHAVCALKYEHFHQSARIIYAGSSVPTRLRPS-KQPLCNRHHLASKQEEKTHIMKC 671

Query: 193 ILSIPTMA 216
           I +I T+A
Sbjct: 672 IYTICTLA 679


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,734,494
Number of Sequences: 59808
Number of extensions: 346721
Number of successful extensions: 1027
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)