Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0342
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132895-4|CAC14401.1|  333|Caenorhabditis elegans Hypothetical ...    29   2.5  
AF039712-2|AAK21401.1|  401|Caenorhabditis elegans Hypothetical ...    28   5.7  
AF039041-7|ABM01867.1|  335|Caenorhabditis elegans G protein, al...    28   5.7  

>AL132895-4|CAC14401.1|  333|Caenorhabditis elegans Hypothetical
           protein Y59A8A.4 protein.
          Length = 333

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -2

Query: 481 IVLFIYVFIK*LSLIEFLFFQISNESYNVTRYMRGAYNTTKYVWHFVY 338
           I LFI+V +  + ++E  +FQI  +  +  RY R  +    Y+W  +Y
Sbjct: 99  ITLFIFVPVSIIGMLENRYFQIFAQQ-SQWRYFRYPFLFINYLWAILY 145


>AF039712-2|AAK21401.1|  401|Caenorhabditis elegans Hypothetical
           protein F54D7.3 protein.
          Length = 401

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -1

Query: 542 TISEGRSRTPELNNSFEILSYSFIYLCIY*IAFINRIS 429
           TI+  RS  P++  +  +LS  F YL ++ +AF+  ++
Sbjct: 3   TINCSRSVPPDVTVNDSVLSIVFTYLALFILAFVGNVT 40


>AF039041-7|ABM01867.1|  335|Caenorhabditis elegans G protein, alpha
           subunit protein 18 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 95  H*RTTCVRDTSILYCVERNYVKVFKEI 175
           H ++ C+R    LYCV+ N + +++E+
Sbjct: 35  HTKSICLRRELYLYCVQLNLLNIYREL 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,136,965
Number of Sequences: 27780
Number of extensions: 271156
Number of successful extensions: 643
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)