Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0342
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.8  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   8.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.7  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 310 LIYVVNDVSCKQNAKHTLSCCT 375
           L++    VSC  + KH   C T
Sbjct: 150 LVFSSGSVSCVPSVKHVAKCAT 171


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = -3

Query: 684 SRVTVKSTMSLEKIIIKQTINKS*LKVTEYSFNKRKTIRIIYFN 553
           SR   +   S E  II    NK+      Y +N     + +Y+N
Sbjct: 67  SRDRTERERSREPKIISSLSNKTIHNNNNYKYNYNNNCKKLYYN 110


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 415 SNESYNVTRYMRGAYNTT 362
           S+ +YN+T    G +NTT
Sbjct: 209 SHPAYNMTFAQNGPFNTT 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,945
Number of Sequences: 438
Number of extensions: 3560
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)