Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0340
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    28   1.1  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   6.0  
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.9  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.9  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    25   7.9  

>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 347 GRTLCPHDAGSDIRRESPPTVQLTTSS 427
           GR++ P D G   R +SP T++  T S
Sbjct: 392 GRSILPADVGCRCRGDSPDTIEFPTDS 418


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 114 YDTWINLQVNNTIEQILDFTEDSDKL-LGFPIRVHVTTNSTLTSDHPLSLRPH 269
           Y  W+  + N+T+ +I+  + DS+ L     + V    +S+L +D   SL  H
Sbjct: 618 YTAWVETEANDTVTEII--SSDSESLSQSLNMAVDFRQSSSLPADKLSSLDIH 668


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 141 NNTIEQILDFTEDSDKLLGFPIRVHVTTNSTLTSD 245
           N T  +I     + D L G PIR+  TTN+ +  D
Sbjct: 67  NYTNVKITATQNNVDALTGAPIRIVTTTNARIQPD 101


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = -1

Query: 544 KKSNSTLASSGLDHLIYLAQFYVEIFDPLQFYVDGYVSATGRRQLYSWRTLSSYV*TCIV 365
           +KSN   A   L   I L  F++E       Y+  +V++       SW TL   + TC+ 
Sbjct: 275 RKSNVLAADRSLCEYIILTLFHME-------YLFSFVAS-------SWSTLDFVITTCLS 320

Query: 364 RAQSPAHVV 338
           R   PA  +
Sbjct: 321 RVAQPAKFI 329


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 336 SIKK*SSVCSTNGSSHEDTPFCC 268
           S+ + SS CS   SS  + P CC
Sbjct: 218 SVNEGSSCCSKKDSSPSEKPSCC 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,467,497
Number of Sequences: 5004
Number of extensions: 50588
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)