Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0340
         (574 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59672| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 28   6.2  

>SB_59672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +3

Query: 165 DFTEDSDKLLGFPIRVHVTTNSTLTSDH---PLSLRPHNRKACPHGNSRWCYRQTITS 329
           D T D+  L+   +R H TT  TLT+ H    L+ R H+R    H  S    R T+ +
Sbjct: 139 DHTHDTSTLM---VRPHCTTRITLTTRHYTITLTTRSHSRHDHTHDTSTLTTRATLVT 193


>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1706

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 29/93 (31%), Positives = 43/93 (46%)
 Frame = +3

Query: 21   SALSPT*RGSDRILGSILAPGITDVHQR*YNYDTWINLQVNNTIEQILDFTEDSDKLLGF 200
            S  + T R  DR L ++LA  I+ V  R    DT + +QVNNT+E  +    D D L   
Sbjct: 1180 SRAAATERDLDRAL-AVLAGDISRVFNR--TRDT-LRVQVNNTLEVGVRVAADHDMLREH 1235

Query: 201  PIRVHVTTNSTLTSDHPLSLRPHNRKACPHGNS 299
              +V     S  ++ H  S+R    +   H N+
Sbjct: 1236 VTKVAAHVRSGYSTLHD-SVRAKINRLLQHVNN 1267


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,584,551
Number of Sequences: 59808
Number of extensions: 397063
Number of successful extensions: 984
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)