Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0340
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39646-7|AAA80371.1|  623|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U39646-6|AAK72058.1|  624|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U39646-5|AAK72057.1|  678|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U28991-14|AAA68388.1|  352|Caenorhabditis elegans Hypothetical p...    27   9.5  
U28991-13|AAA68387.1|  281|Caenorhabditis elegans Hypothetical p...    27   9.5  

>U39646-7|AAA80371.1|  623|Caenorhabditis elegans Hypothetical
           protein F47B7.2a protein.
          Length = 623

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 75  APGITDVHQR*YNYDTWINLQVNNTIEQILDFTEDSDKLLGFPIRVHVT 221
           APG T + +  +  D WI LQ   T  + +   ++  + LG P+   +T
Sbjct: 355 APGTTPMRRLFFRLDEWIQLQSVVTANEWITKVDEIQQALGNPLPKEIT 403


>U39646-6|AAK72058.1|  624|Caenorhabditis elegans Hypothetical
           protein F47B7.2c protein.
          Length = 624

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 75  APGITDVHQR*YNYDTWINLQVNNTIEQILDFTEDSDKLLGFPIRVHVT 221
           APG T + +  +  D WI LQ   T  + +   ++  + LG P+   +T
Sbjct: 355 APGTTPMRRLFFRLDEWIQLQSVVTANEWITKVDEIQQALGNPLPKEIT 403


>U39646-5|AAK72057.1|  678|Caenorhabditis elegans Hypothetical
           protein F47B7.2b protein.
          Length = 678

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 75  APGITDVHQR*YNYDTWINLQVNNTIEQILDFTEDSDKLLGFPIRVHVT 221
           APG T + +  +  D WI LQ   T  + +   ++  + LG P+   +T
Sbjct: 355 APGTTPMRRLFFRLDEWIQLQSVVTANEWITKVDEIQQALGNPLPKEIT 403


>Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical protein
            C09F9.2 protein.
          Length = 1642

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 475  EIFDPLQFYVDGYVSATGRRQLYSWRTLSSYV*TCIVRAQSP 350
            +IFD    YV+GY++A   R+L+S       +  C+    SP
Sbjct: 1200 DIFDVETTYVNGYLTANFSRELHSEDEFDVDLQECVFLLYSP 1241


>U28991-14|AAA68388.1|  352|Caenorhabditis elegans Hypothetical
           protein F08F8.1 protein.
          Length = 352

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 568 SRSKGFDRKKSNSTLASSGLDH 503
           SRS+GFDR +S S   S+  DH
Sbjct: 53  SRSRGFDRSRSRSRSRSNFHDH 74


>U28991-13|AAA68387.1|  281|Caenorhabditis elegans Hypothetical
           protein F08F8.5 protein.
          Length = 281

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 568 SRSKGFDRKKSNSTLASSGLDH 503
           SRS+GFDR +S S   S+  DH
Sbjct: 127 SRSRGFDRSRSRSRSRSNFHDH 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,532,959
Number of Sequences: 27780
Number of extensions: 285141
Number of successful extensions: 599
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)