Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0340
         (574 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   3.8  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   8.7  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +3

Query: 192 LGFPIRVHVTTNSTLTSDHPLS---LRPHNRKACP 287
           L  P+R+HV+  + +   +P+S   L P  ++  P
Sbjct: 620 LSEPLRIHVSPTTYILLKYPISGFDLEPRQKEFLP 654


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +1

Query: 229 VHSQVIILYHYGHTTERRVLMGTPVGATDR 318
           +HS  ++    GH   R  L G  V  T R
Sbjct: 514 IHSGEVVTGVIGHRMPRYCLFGNTVNLTSR 543


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +1

Query: 229 VHSQVIILYHYGHTTERRVLMGTPVGATDR 318
           +HS  ++    GH   R  L G  V  T R
Sbjct: 514 IHSGEVVTGVIGHRMPRYCLFGNTVNLTSR 543


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 204 IRVHVTTNSTLTSDHP 251
           + +H + N TLT D P
Sbjct: 254 LSLHASLNHTLTKDQP 269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,366
Number of Sequences: 438
Number of extensions: 4065
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)