Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0340
         (574 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70610.1 68414.m08135 ABC transporter (TAP1) contains Pfam pr...    29   2.9  
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria...    28   3.8  
At3g23000.1 68416.m02900 CBL-interacting protein kinase 7 (CIPK7...    28   3.8  
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ...    28   5.1  
At2g29150.1 68415.m03543 tropinone reductase, putative / tropine...    27   6.7  
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-...    27   8.9  

>At1g70610.1 68414.m08135 ABC transporter (TAP1) contains Pfam
           profile: PF00005 ABC transporters; similar to TAP1
           protein (transporter of processed antigen) GB:AAD53033
           (Oncorhynchus mykiss); identical to cDNA transporter
           associated with antigen processing-like protein (TAP1)
           GI:19335721
          Length = 700

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 19  FRP*AQHKGALIEYLVVSWHLALLTSISDDIITTLGLIY 135
           FR   Q  GALI  L++SW L L T +   I+  +  +Y
Sbjct: 258 FRNVLQGTGALIYLLILSWPLGLCTLVICCILAAVMFVY 296


>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
           identical to SP|P83483 ATP synthase beta chain 1,
           mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}; strong similarity to SP|P17614 ATP synthase
           beta chain, mitochondrial precursor (EC 3.6.3.14)
           {Nicotiana plumbaginifolia}; contains Pfam profiles
           PF00006: ATP synthase alpha/beta family
           nucleotide-binding domain, PF00306: ATP synthase ab C
           terminal, PF02874: ATP synthase alpha/beta family
           beta-barrel domain; supporting cDNA
           gi|26452102|dbj|AK118538.1|
          Length = 556

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -3

Query: 521 ELGFRSPHLPCPVLCRNLRPSSVLCRRIR*RYWTSS 414
           +LG R+P LP P   R+  P S L  R+   Y TSS
Sbjct: 21  KLGNRNPRLPSPSPARHAAPCSYLLGRVA-EYATSS 55


>At3g23000.1 68416.m02900 CBL-interacting protein kinase 7 (CIPK7)
           identical to CBL-interacting protein kinase 7
           [Arabidopsis thaliana] gi|13249113|gb|AAK16682; contains
           Pfam profiles PF00069: Protein kinase domain and
           PF03822: NAF domain; identical to cDNA CBL-interacting
           protein kinase 7 (CIPK7) GI:13249112
          Length = 429

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 93  VHQR*YNYDTWINLQVNNTIEQILD 167
           +H+R Y + +WI+ Q  + I Q+LD
Sbjct: 238 IHRRDYRFPSWISKQAKSIIYQMLD 262


>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
           protein RNA-binding protein LAH1, Saccharomyces
           cerevisiae, PIR2:B48600; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 433

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 419 TSSSANVSVDIKLKRVEDFYIELGKVNEV 505
           T +++  S D+K + VE F+ + GKVN V
Sbjct: 117 TVAASPFSYDVKREDVESFFSQYGKVNSV 145


>At2g29150.1 68415.m03543 tropinone reductase, putative / tropine
           dehydrogenase, putative similar to tropinone reductase
           SP:P50165 from [Datura stramonium]
          Length = 268

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +2

Query: 335 LNDMGRTLCPHDAGSDIRRESPPTVQLTTSSSANVSVDIKLKRVEDFYIELGKVNE 502
           +N +GR+L    A  +IR  S     +TT  ++ +  D KL++  +    +G+V E
Sbjct: 174 MNQLGRSLACEWASDNIRVNSVCPWVITTPLTSFIFSDEKLRKAVEDKTPMGRVGE 229


>At5g53170.1 68418.m06610 FtsH protease, putative similar to
           ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
           musculus]
          Length = 806

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 20/50 (40%), Positives = 24/50 (48%)
 Frame = -3

Query: 416 SAVQLEDSLFLCLNLHREGTKSCPCRLASRSNRLSVAPTGVPMRTRLSVV 267
           S+  L+ SLFL   LH    K  PC  +S S  LS  P  +    RLS V
Sbjct: 2   SSSTLQASLFLRPPLHTSSFKLYPCLFSSSS--LSFCPQSLSSFYRLSSV 49


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,887,415
Number of Sequences: 28952
Number of extensions: 271139
Number of successful extensions: 614
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)