Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0339
(401 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 27 0.82
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 27 1.4
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 25 3.3
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 25 4.4
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 25 4.4
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 25 4.4
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 25 4.4
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 5.8
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 25 5.8
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|... 25 5.8
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 25 5.8
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc... 24 7.7
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 27.5 bits (58), Expect = 0.82
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 312 RYRRHASEDQEELRHYDEHFLIPRDIF 392
RY+R ASE E L + HF I +F
Sbjct: 99 RYKRDASESDELLNEFSNHFGISDPLF 125
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 26.6 bits (56), Expect = 1.4
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = -1
Query: 158 SMDASLFSGLVTL--RTYLRFGSSCTSSIFEGRIGWSAVLGARGTLS 24
S + SLFS R RF F G++GW +LG+ S
Sbjct: 347 SSNTSLFSNFTFFLSREVPRFSLEFVIRAFGGKVGWDPILGSGSPFS 393
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 25.4 bits (53), Expect = 3.3
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +3
Query: 240 PSRETPVPTLPPFNPKPIYIDMGNRYRRHASEDQEELRHYDE 365
P +P+P P +P ++ Y R++ + + LR Y E
Sbjct: 61 PVTLSPIPITPVREFQPYLHEISQEYARYSKQKRASLRRYLE 102
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 25.0 bits (52), Expect = 4.4
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -3
Query: 294 ILAWG*TEEALEQEFPSRVQKPQVPCVTVALDRLVKSSINCM 169
I WG +++EF ++ P T LD L+ S N M
Sbjct: 652 IFPWGVLVNVIKREFDPNTREQVAPHETYVLDVLLPISSNSM 693
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.0 bits (52), Expect = 4.4
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = +3
Query: 240 PSRETPVPTLPPFNPKPIYIDMGNRYRRHASEDQEELRHYDEHFLIP 380
P+R PTLP + P+ G+RY ++ Y +++ P
Sbjct: 490 PTRSVEAPTLPSYAPRHPTQANGSRYMNPSTSRMTPQSPYMQNYYRP 536
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 25.0 bits (52), Expect = 4.4
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +2
Query: 122 VSPIQKITRRPLNTHIIQLI 181
+ P+ + T PLN+H++Q I
Sbjct: 165 IEPVNEFTSPPLNSHLLQNI 184
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.0 bits (52), Expect = 4.4
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +1
Query: 19 QGDNVPRAPSTADHPILPSKIDDVQLD-PNRRYVRSVTNPENNEA 150
Q VPR PS D P L S+ D P+ V V NP ++ A
Sbjct: 95 QAQPVPRRPSLFDRPNLVSRSSSRLGDSPSLSPVAQVANPIHHTA 139
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 24.6 bits (51), Expect = 5.8
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +3
Query: 192 PADREPP*HKGPAVFVPSRETPVPTLPP 275
P +PP PA +PS P P PP
Sbjct: 168 PPSFQPPSAAAPATSLPSDYNPPPPPPP 195
>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 775
Score = 24.6 bits (51), Expect = 5.8
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 145 EASIEHSHHTVDTGLDQPIESHRNTRDLRFLYPRGKLLFQRFLRLTPSQ 291
E+SI + ++ + LD PIE RD++ + L R +L P +
Sbjct: 556 ESSISSTDNSGQSLLDIPIEQEEQERDMKIQLDLLEELQSRVQKLVPER 604
>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 570
Score = 24.6 bits (51), Expect = 5.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 140 FSGLVTLRTYLRFGSSCTSSIFEGRIG 60
+ GL+ LR +L F SC E +G
Sbjct: 190 YGGLIALRFFLGFTESCLLPAMEATMG 216
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 24.6 bits (51), Expect = 5.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 208 HRNTRDLRFLYPRGKLLFQR 267
++NT+ RF YP GK Q+
Sbjct: 170 NKNTKKTRFFYPLGKNCLQK 189
>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 899
Score = 24.2 bits (50), Expect = 7.7
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 86 TCSSIQTEGMFAVSPIQKITRR 151
TC+ ++T+ +S +Q+ITRR
Sbjct: 13 TCADLETDMYNGLSSLQEITRR 34
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,904,546
Number of Sequences: 5004
Number of extensions: 43028
Number of successful extensions: 181
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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