Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0339
         (401 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   0.99 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   4.0  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   6.9  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   6.9  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              20   9.2  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.4 bits (48), Expect = 0.99
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +3

Query: 27  QCSSCAKYCRPSDSSFENRRRAARSKPKVCSQCHQS 134
           QC  C+K     ++   +RR   + +P  C  C ++
Sbjct: 121 QCEYCSKSFSVKENLSVHRRIHTKERPYKCDVCERA 156



 Score = 21.8 bits (44), Expect = 3.0
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +3

Query: 27  QCSSCAKYCRPSDSSFENRRRAARSKPKVCSQC 125
           +C+ C+K    S     + R     KP VC  C
Sbjct: 177 KCTVCSKTFIQSGQLVIHMRTHTGEKPYVCKAC 209


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 64  SDGLQYLAHEEHCHLDTA 11
           + G+QYLA   + H D A
Sbjct: 745 ASGMQYLAEMNYVHRDLA 762


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 12/55 (21%), Positives = 23/55 (41%)
 Frame = +1

Query: 7   LWLYQGDNVPRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHH 171
           L+L   ++    P +A+     S     +  P+   +   + PE+ +  I  SHH
Sbjct: 20  LYLLDNNDSSGIPHSAESSASNSPDHYERFSPSTHLMDLSSPPEHRDLPIYQSHH 74


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 209 TVTQGTCGFCTLEGNSC 259
           ++ QGT  +C   G+SC
Sbjct: 27  SIRQGTTSYCLGCGDSC 43


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 308 KPLPTTCV 331
           KPLPT CV
Sbjct: 34  KPLPTECV 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,323
Number of Sequences: 438
Number of extensions: 3468
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)