Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0339
(401 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g10520.1 68414.m01184 DNA polymerase lambda (POLL) identical ... 31 0.29
At5g61240.1 68418.m07681 leucine-rich repeat family protein cont... 31 0.38
At1g28420.1 68414.m03494 homeobox transcription factor, putative... 29 1.2
At5g48385.1 68418.m05980 expressed protein 29 1.5
At3g57420.1 68416.m06393 expressed protein contains Pfam domain ... 28 2.7
At2g14120.2 68415.m01573 dynamin-like protein 2b (ADL2b) identic... 28 2.7
At2g14120.1 68415.m01572 dynamin-like protein 2b (ADL2b) identic... 28 2.7
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam... 27 3.5
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam... 27 3.5
At3g06440.1 68416.m00745 galactosyltransferase family protein co... 27 3.5
At5g26080.1 68418.m03103 proline-rich family protein contains pr... 27 4.7
At5g05140.1 68418.m00545 transcription elongation factor-related... 27 4.7
At5g01790.1 68418.m00098 expressed protein 27 4.7
At2g34670.1 68415.m04259 proline-rich family protein contains pr... 27 4.7
At1g79860.1 68414.m09329 expressed protein contains Pfam profile... 27 4.7
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 27 6.2
At2g35035.1 68415.m04298 urease accessory family protein (URED) ... 27 6.2
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 27 6.2
At1g70990.1 68414.m08190 proline-rich family protein 27 6.2
At5g59260.1 68418.m07426 lectin protein kinase, putative similar... 26 8.2
At5g56330.1 68418.m07031 carbonic anhydrase family protein conta... 26 8.2
At3g20710.1 68416.m02621 F-box protein-related contains weak hit... 26 8.2
At2g02560.1 68415.m00195 TIP120 protein, putative similar to TBP... 26 8.2
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 26 8.2
>At1g10520.1 68414.m01184 DNA polymerase lambda (POLL) identical to
DNA polymerase lambda GI:12053869 from [Arabidopsis
thaliana]
Length = 529
Score = 31.1 bits (67), Expect = 0.29
Identities = 17/73 (23%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = +1
Query: 7 LWLYQG-DNVPRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTVDT 183
L LYQ ++ + A+ + KID ++D ++ + +++ E+ + + + ++ D
Sbjct: 86 LMLYQWLEDSLTSGEKANEDLYVLKIDSEEVDKPKKSLPAISGSEDQSSPQKRTRYSPDA 145
Query: 184 GLDQPIESHRNTR 222
G + +ESH NT+
Sbjct: 146 GDFKGVESHSNTQ 158
>At5g61240.1 68418.m07681 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Hcr2-0B
[Lycopersicon esculentum] gi|3894387|gb|AAC78593
Length = 380
Score = 30.7 bits (66), Expect = 0.38
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 344 FLILRRMSSVTVSHINIYWLGVKRRKRWNR 255
+L MSS + H+NIY + + R RWN+
Sbjct: 157 YLCHHNMSSFQILHLNIYSVVITRNLRWNK 186
>At1g28420.1 68414.m03494 homeobox transcription factor, putative
similar to homeobox transcription factor Hox7 GI:19486
[Lycopersicon peruvianum]
Length = 1703
Score = 29.1 bits (62), Expect = 1.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 384 PSESESAHHNAAILLDPPTHVVGNGFPY 301
PS ESAHH LL+ + V+G PY
Sbjct: 318 PSPIESAHHGDRFLLEKDSSVLGTEDPY 345
>At5g48385.1 68418.m05980 expressed protein
Length = 558
Score = 28.7 bits (61), Expect = 1.5
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -2
Query: 244 EGTKTAGPLCYGGSRSAGQVQYQLYDVSVQWTPRYFLDW*HCE-HTFGLDRAARRRFSKE 68
E T++ L S Q+Q ++ Q L W E H GL+R+ +RRF +
Sbjct: 2 EDTRSVASLMDSTSSKIQQLQKAFAELESQRAVTLNLKWKELEEHFHGLERSLKRRFHEL 61
Query: 67 ESDGLQY 47
E +Y
Sbjct: 62 EDQEKEY 68
>At3g57420.1 68416.m06393 expressed protein contains Pfam domain
PF03385: Protein of unknown function, DUF288
Length = 765
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 65 FFLRKSTTCSSIQTEGMFAVSPIQKITRRPLNTHIIQLILDLTS 196
FFL +T +S+ + +Q +TR +N + IQ++ D TS
Sbjct: 58 FFLYNTTDTASLLCFQSQSTQSLQSLTRPQINWNSIQIVSDKTS 101
>At2g14120.2 68415.m01573 dynamin-like protein 2b (ADL2b) identical
to dynamin like protein 2b (ADL2b) [Arabidopsis
thaliana] GI:19032339
Length = 780
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 270 EALEQEFPSRVQKPQVPCVTVALDRLVKSSINCMM 166
E L + SR+ P + C D LVK S CMM
Sbjct: 430 EVLVRRQISRLLDPSLQCARFIFDELVKISHQCMM 464
>At2g14120.1 68415.m01572 dynamin-like protein 2b (ADL2b) identical
to dynamin like protein 2b (ADL2b) [Arabidopsis
thaliana] GI:19032339
Length = 780
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 270 EALEQEFPSRVQKPQVPCVTVALDRLVKSSINCMM 166
E L + SR+ P + C D LVK S CMM
Sbjct: 430 EVLVRRQISRLLDPSLQCARFIFDELVKISHQCMM 464
>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 482
Score = 27.5 bits (58), Expect = 3.5
Identities = 19/68 (27%), Positives = 30/68 (44%)
Frame = +1
Query: 4 PLWLYQGDNVPRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTVDT 183
P GD A TADH IL + I + + +VT+ N++ ++ HS T
Sbjct: 277 PTVTQNGDGSSTASGTADHSILNADI------TTQVHTLTVTSSSNSQQAVSHSEVAKAT 330
Query: 184 GLDQPIES 207
P+E+
Sbjct: 331 EDAAPLEN 338
>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 743
Score = 27.5 bits (58), Expect = 3.5
Identities = 19/68 (27%), Positives = 30/68 (44%)
Frame = +1
Query: 4 PLWLYQGDNVPRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTVDT 183
P GD A TADH IL + I + + +VT+ N++ ++ HS T
Sbjct: 538 PTVTQNGDGSSTASGTADHSILNADI------TTQVHTLTVTSSSNSQQAVSHSEVAKAT 591
Query: 184 GLDQPIES 207
P+E+
Sbjct: 592 EDAAPLEN 599
>At3g06440.1 68416.m00745 galactosyltransferase family protein
contains Pfam profile: PF01762 galactosyltransferase
Length = 619
Score = 27.5 bits (58), Expect = 3.5
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 198 DREPP*HKGPAVFVPSRETPVPTLPPFNPKPIYI 299
D P +G F+P E P+ + PP+ P YI
Sbjct: 499 DSSPDREQGSKWFIPKEEWPLDSYPPWAHGPGYI 532
>At5g26080.1 68418.m03103 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 141
Score = 27.1 bits (57), Expect = 4.7
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +3
Query: 207 PP*HKGPAVFVPSRETPVPTLPPFNPKPIY 296
PP + P F P P PP P PIY
Sbjct: 57 PPVYSRPVAFPPPPPIYSPPPPPIYPPPIY 86
>At5g05140.1 68418.m00545 transcription elongation factor-related
low similarity to transcription elongation factor
TFIIS.h [Mus musculus] GI:3288547, elongin A [Mus
musculus] GI:6009624
Length = 436
Score = 27.1 bits (57), Expect = 4.7
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 70 PSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTVD-TGLDQPIESHRNTRD 225
PS +D+ + P+ Y + PE N I H ++D G + E H +R+
Sbjct: 233 PSVLDEEEAFPSLPYDVDIFTPEPNGFEISHFFDSLDFDGNPRNSEEHNTSRE 285
>At5g01790.1 68418.m00098 expressed protein
Length = 188
Score = 27.1 bits (57), Expect = 4.7
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 240 PSRETPVPTLPPFNPKPIYIDM-GNRYRRHASEDQEEL 350
PS E +PTLPP P P + G++ RR + + +++
Sbjct: 69 PSSE--LPTLPPLTPPPSHFSFSGDQIRRRSKKSTKKI 104
>At2g34670.1 68415.m04259 proline-rich family protein contains
proline-rich region, INTERPRO:IPR000694
Length = 561
Score = 27.1 bits (57), Expect = 4.7
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +3
Query: 237 VPSRETPVPTLPPF--NPKPIYIDMGNRYRRHASEDQEE 347
+P +P PTLPP P P D+ N H D+EE
Sbjct: 72 LPLPPSPPPTLPPSPPPPPPFSPDLRNPETSHDLADEEE 110
>At1g79860.1 68414.m09329 expressed protein contains Pfam profile
PF03759: Domain of unknown function (DUF315)
Length = 515
Score = 27.1 bits (57), Expect = 4.7
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 130 NPENNEASIEHSHHTVDTGLDQPIESHRNTRDLRFLYP 243
N +NN A+ + +V+TGLD+ + L ++P
Sbjct: 23 NNDNNSATRHNKSLSVETGLDEAATGSHDAEPLTIIHP 60
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 192 PADREPP*HKGPAVFVPSRETPVPTLPPFNPKPI 293
P +PP + P + P E+PVP P++ PI
Sbjct: 587 PKQEQPPKTEAPKMGSPPLESPVPN-DPYDASPI 619
>At2g35035.1 68415.m04298 urease accessory family protein (URED)
contains Pfam profile: PF01774 urease accessory protein
UreD
Length = 294
Score = 26.6 bits (56), Expect = 6.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 119 RTYLRFGSSCTSSIFEGRIGWSAVL 45
+ Y GS C+ I E RIG A+L
Sbjct: 80 KVYKAIGSKCSEQILEARIGSEALL 104
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 26.6 bits (56), Expect = 6.2
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 192 PADREPP*HKGPAVFVPSRETPVPTL-PPFNPKPI 293
P ++PP + P P ++ P PT PP P PI
Sbjct: 70 PPIQKPPTYSPPIYPPPIQKPPTPTYSPPIYPPPI 104
>At1g70990.1 68414.m08190 proline-rich family protein
Length = 176
Score = 26.6 bits (56), Expect = 6.2
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 207 PP*HKGPAVFVPSRETPVPTLPPFNPKPIY 296
PP P+ PS+ P P LPP PK Y
Sbjct: 93 PPSPPPPSPPPPSQACPPPPLPPSPPKKSY 122
>At5g59260.1 68418.m07426 lectin protein kinase, putative similar to
receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733; contains protein kinase domain,
Pfam:PF00069; contains legume lectins alpha and beta
domains, Pfam:PF00138 and Pfam:PF00139
Length = 674
Score = 26.2 bits (55), Expect = 8.2
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +2
Query: 68 FLRKSTTCSSIQTEGMFAVSPIQKITRRPLNTHIIQLILDLTSRSRATVTQG 223
F S + S TE +FA+ P+QK T ++ DL S A G
Sbjct: 74 FTASSLSSFSFSTEFVFAIFPLQKSTYGHGMAFVVSPTKDLRSNGSANSNLG 125
>At5g56330.1 68418.m07031 carbonic anhydrase family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains Pfam profile PF00194: Eukaryotic-type carbonic
anhydrase
Length = 350
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 192 PADREPP*HKGPAVFVPS-RETPVPTLPPFNPKP 290
PA + P PA P + TP PT P PKP
Sbjct: 24 PAPKPPKPKPAPAPTPPKPKPTPAPTPPKPKPKP 57
>At3g20710.1 68416.m02621 F-box protein-related contains weak hit to
TIGRFAM TIGR01640 : F-box protein interaction domain;
contains weak hit to Pfam PF00646: F-box domain
Length = 362
Score = 26.2 bits (55), Expect = 8.2
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = -1
Query: 311 VSHINIYWLGVKRRKRWNRSFPRGYKNRRSLVLR 210
++ N++W+GV + N SF + + +V R
Sbjct: 61 ITQFNVFWVGVNLHRSQNNSFDLSIQLKAKIVSR 94
>At2g02560.1 68415.m00195 TIP120 protein, putative similar to
TBP-interacting protein TIP120 GI:1799570 from [Rattus
norvegicus]
Length = 1219
Score = 26.2 bits (55), Expect = 8.2
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Frame = +3
Query: 315 YRRHASEDQEELRHYD----EHFLI--PRDIFP 395
Y ASE+ EELR Y E FL+ PRDI P
Sbjct: 260 YCTSASENDEELREYSLQALESFLLRCPRDISP 292
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 26.2 bits (55), Expect = 8.2
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 192 PADREPP*HKGPAVFVPSRETPVPTLPPFNPKP 290
P ++ PP P +PSR P P P P+P
Sbjct: 567 PINKTPPPPPPPPPPLPSRSIPPPLAQPPPPRP 599
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,113,434
Number of Sequences: 28952
Number of extensions: 235909
Number of successful extensions: 942
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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