Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0336
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18175| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   3e-05
SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16)                31   1.1  
SB_50682| Best HMM Match : CSD (HMM E-Value=2.1e-38)                   29   3.4  
SB_13030| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)                   28   5.9  
SB_786| Best HMM Match : EGF (HMM E-Value=0)                           28   5.9  
SB_22853| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_18413| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_3110| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_18175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 68

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 24/48 (50%), Positives = 28/48 (58%)
 Frame = +3

Query: 291 DIEGEYVPLPGDEVIYRLCPIPPKFEKFQAVHVRIIHLTPEKHVKWDE 434
           DIE E+V   GD V +R   IPPK +  QAV V II    + H KWDE
Sbjct: 20  DIESEFVLKEGDRVTFRTIAIPPKEQAKQAVEVNIIEARGQ-HKKWDE 66


>SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16)
          Length = 518

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/72 (31%), Positives = 30/72 (41%)
 Frame = +1

Query: 46  QSNLLIMSNDYGFNSDDSPNKTNSHLQLPSPIITRRNRTASTSERALGNPLETGKIKTFC 225
           Q N +I++ D       SPN T+S     SPI+T     A T     G P  + K   FC
Sbjct: 405 QDNSIIITQDR-----TSPNNTSSSAPDKSPILTDMKDFAQTFPTE-GTPKYSNKDGMFC 458

Query: 226 REKGHGFVKPKK 261
              G G    K+
Sbjct: 459 ERNGDGIYAEKE 470


>SB_50682| Best HMM Match : CSD (HMM E-Value=2.1e-38)
          Length = 80

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 199 ETGKIKTFCREKGHGFVKPKKGAKIY 276
           + G +K F  EKG+GF+ P+ G  ++
Sbjct: 16  QNGTVKWFNDEKGYGFITPQSGDDLF 41


>SB_13030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 38

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 374 SSCP-CAHNSSHSGETRQVGRTTSVT 448
           SSCP C     H+G  R +GRT S +
Sbjct: 4   SSCPTCVRTGGHAGCVRLIGRTASAS 29


>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
          Length = 492

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 301 PSISDIWRNISSPPFSVSQIRDLSL 227
           PS SDI R++  PP  +S +R L+L
Sbjct: 275 PSPSDIKRSVPYPPRQISNVRSLTL 299


>SB_786| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1427

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 395  NSSHSGETRQVGRTTSVTIKNP 460
            NS ++G+TRQ G T +V  +NP
Sbjct: 1223 NSFYTGQTRQTGLTRNVIYRNP 1244


>SB_22853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -1

Query: 355 GIGQSRYITSSPGRGTYSPSISDIWRNISSPPFSVSQIRDLSLCRTS*F 209
           G  +S  +  +PG   YSPS      + +S P S S+I+  SL +T+ F
Sbjct: 13  GHHRSTVLADTPGGSLYSPSQDQDTLDETSSPSSRSRIQASSLVKTNEF 61


>SB_18413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +1

Query: 271 IYFSIYLISKVNMYPCLVMKLYIDFAQSHLSSK 369
           IY ++YL S+V+  PC+   +Y+    SH+S+K
Sbjct: 131 IYQAMYLPSRVSTEPCIYQAVYL---PSHVSTK 160


>SB_3110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 73  DYGFNSDDSPNKTNSHLQLPSPIITRRNRTASTSERALGNPLETGKI 213
           D GF  DD  N  ++ L LPS +  ++ R  +T    L    E  K+
Sbjct: 278 DNGFTDDDKKNLRDAGLPLPSVVWDKQMRDDTTIREMLDKSGEINKM 324


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,638,085
Number of Sequences: 59808
Number of extensions: 463687
Number of successful extensions: 1102
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)