Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0336
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g03140.1 68416.m00310 expressed protein                             33   0.22 
At4g21100.1 68417.m03051 UV-damaged DNA-binding protein, putativ...    28   4.8  
At4g16600.1 68417.m02511 glycogenin glucosyltransferase (glycoge...    28   4.8  
At3g19450.1 68416.m02466 cinnamyl-alcohol dehydrogenase (CAD) id...    28   6.3  
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c...    27   8.4  
At4g18600.1 68417.m02755 expressed protein                             27   8.4  

>At3g03140.1 68416.m00310 expressed protein
          Length = 769

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = +1

Query: 82  FNSDDSPNKTNSHLQLPSPIITRRNRTASTSERALGNPLETGKIKT-----FCREKGHGF 246
           F++DD+  + NS L++P P   R+ +     ++ L N   T   KT     F  E+GH  
Sbjct: 652 FSNDDNSVRRNSSLRIPRPPAERKQQHQQQQKKLLKNTNATASQKTRALSSFSGEQGHNG 711

Query: 247 VKPKK 261
           +K  +
Sbjct: 712 MKASR 716


>At4g21100.1 68417.m03051 UV-damaged DNA-binding protein, putative
           similar to UV-damaged DNA binding protein (GI:12082087)
           [Oryza sativa] and damage-specific DNA binding protein
           1, Homo sapiens, PIR2:I38908; contains Pfam PF03178 :
           CPSF A subunit region
          Length = 1088

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -2

Query: 345 KVDI*LHHQAGVHIHLRYQIYGEIYLRPLFRFH---KSVTFLSAERLDFTSFQW 193
           +++I L    G+   L   +YG I    LFR H   +   F++ ER  F   QW
Sbjct: 39  RIEIHLLSPQGLQTILDVPLYGRIATMELFRPHGEAQDFLFVATERYKFCVLQW 92


>At4g16600.1 68417.m02511 glycogenin glucosyltransferase
           (glycogenin)-related low similarity to glycogenin-1 from
           Rattus norvegicus [SP|O08730], Homo sapiens [GI:496895],
           Mus musculus [SP|Q9R062]
          Length = 442

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 525 YKIRRVFDGKRPCIKTKKVTYLGFLIVTEVVRP 427
           Y++   +  + P + T+ V YLG ++VT + RP
Sbjct: 258 YQMDASYYSEMPWVLTQAVFYLGIILVTRLARP 290


>At3g19450.1 68416.m02466 cinnamyl-alcohol dehydrogenase (CAD)
           identical to SP|P48523 Cinnamyl-alcohol dehydrogenase
           (EC 1.1.1.195) (CAD) [Arabidopsis thaliana]
          Length = 365

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 112 NSHLQLPSPIITRRNRTASTSERALGNPLETGKIKTFCREKG 237
           N+ LQ  +P++    +  S S   +G+  ET ++  FC+EKG
Sbjct: 279 NTPLQFVTPLVILGRKVISGS--FIGSIKETEEVLAFCKEKG 318


>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
           contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
           domain and PF00098: Zinc knuckle
          Length = 299

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 202 TGKIKTFCREKGHGFVKPKKGA 267
           TGK+  F   KG+GF+ P  G+
Sbjct: 12  TGKVNWFNASKGYGFITPDDGS 33


>At4g18600.1 68417.m02755 expressed protein
          Length = 1907

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 367  SNLGGIGQSRYITSSPGRGTYSPSISDIWRNISSPPFSVSQIRDL 233
            S+ G      +  SSP    Y  S S++W +  SP  SVS ++ +
Sbjct: 1778 SDDGDDNSDTFCQSSPCVSDYCLSDSELWESDESPRISVSSLKQV 1822


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,509,868
Number of Sequences: 28952
Number of extensions: 322260
Number of successful extensions: 859
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)