Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0333
         (727 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0)                     42   7e-04
SB_20015| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.006
SB_23015| Best HMM Match : WW (HMM E-Value=2.8e-16)                    36   0.025
SB_13740| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.033
SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12)                     33   0.24 
SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31)                     33   0.24 
SB_52413| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.72 
SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.72 
SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.95 
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.95 
SB_44622| Best HMM Match : dsrm (HMM E-Value=3.1e-16)                  30   1.7  
SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)                     30   1.7  
SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_21992| Best HMM Match : LRR_1 (HMM E-Value=3.2e-07)                 29   2.9  
SB_10355| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0037)         29   3.8  
SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10)                 29   5.1  
SB_59297| Best HMM Match : zf-DNL (HMM E-Value=0.68)                   28   6.7  
SB_23179| Best HMM Match : REV (HMM E-Value=4.8)                       28   6.7  
SB_26933| Best HMM Match : CXC (HMM E-Value=0.0082)                    28   8.9  
SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004)         28   8.9  
SB_2996| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.9  

>SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0)
          Length = 709

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = +3

Query: 81  EEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 182
           E  LPEGW   KSR  G  YY N  T +S+W+ P
Sbjct: 80  EANLPEGWIISKSRQHGRMYYFNTETAESRWQHP 113


>SB_20015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 14/31 (45%), Positives = 23/31 (74%)
 Frame = +3

Query: 90  LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 182
           LP GWE R++ S G TYY++ +T+ + W++P
Sbjct: 415 LPHGWE-RRTDSRGRTYYVDHNTRTTTWQRP 444



 Score = 33.9 bits (74), Expect = 0.13
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 81  EEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 182
           EE LP GWE R     G  YY++ +++ + WE+P
Sbjct: 380 EEPLPPGWEQRVDPH-GRIYYVDHNSRTTAWERP 412


>SB_23015| Best HMM Match : WW (HMM E-Value=2.8e-16)
          Length = 678

 Score = 36.3 bits (80), Expect = 0.025
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +3

Query: 78  QEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 182
           +E   P GW     R     +Y N  TKKSQWE P
Sbjct: 415 EESASPPGWSCHWDRKYKQYFYTNLETKKSQWEFP 449



 Score = 32.7 bits (71), Expect = 0.31
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +3

Query: 42  FPAQRTNDMASTQEEILPEG---WEARKSRSTGMTYYLNKHTKKSQWEKPGG 188
           F  ++ ND    +E +  +    W+A +  ++   YY N+ T + QWE P G
Sbjct: 92  FQQEQDNDKEHDEEPMEEDPNYPWQACRDEASNCYYYWNQETNEVQWEMPPG 143


>SB_13740| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 35.9 bits (79), Expect = 0.033
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +3

Query: 69  ASTQEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGGPAS 197
           ++ Q   LPEGWE R+  + G T+Y++  T+ + W +P   ++
Sbjct: 177 SAEQPPPLPEGWEERQD-ANGRTFYIDHTTRTTTWVRPSSEST 218


>SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12)
          Length = 893

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 90  LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 182
           LP GWE    ++TG  +Y + +T+ + W  P
Sbjct: 489 LPHGWEKAVDQTTGRIFYRDHNTQTTHWNPP 519


>SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31)
          Length = 662

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 102 WEARKSRSTGMTYYLNKHTKKSQWEKP 182
           W   K+ S G TYY N  T++S WEKP
Sbjct: 87  WLEHKT-SDGKTYYYNARTRESAWEKP 112


>SB_52413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 838

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 72  STQEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 182
           S+Q+   P+GWE  +S   G+ YY+N  T  SQ E P
Sbjct: 358 SSQQTESPDGWEQVESPQYGI-YYVNHATGSSQREHP 393


>SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 826

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 78  QEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 182
           Q+  LP GWE     ++G  ++++ +T+ + W  P
Sbjct: 4   QQHPLPNGWEMTVDPNSGRPFFIDHNTRTTTWTDP 38


>SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1668

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 90  LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 182
           LP GWE  +    G  YY++ ++ ++ W  P
Sbjct: 11  LPVGWEEARDTRDGRVYYIDHYSHRTTWIDP 41


>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1913

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 75   TQEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 182
            + E  LP+GW   +S  TG  YY +  +  +QWE+P
Sbjct: 1273 SNEYELPDGWMEVES-GTGSKYYWHVSSGTTQWERP 1307


>SB_44622| Best HMM Match : dsrm (HMM E-Value=3.1e-16)
          Length = 724

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 90  LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 182
           LP+GW A   RS G+  YL++ T+   W +P
Sbjct: 52  LPDGWLALNHRSGGI-IYLHRPTRVCTWSRP 81


>SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)
          Length = 693

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 51  QRTNDMASTQEEILPE-GWEARKSRSTGMTYYLNKHTKKSQWEKP 182
           Q+ +++ +  E IL    W+  K+ S G  YY N  TK+S W +P
Sbjct: 194 QKPDELKTPSEIILDSFPWKEHKADS-GRVYYHNTETKESIWTEP 237


>SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1393

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 81  EEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 182
           ++ LP GWE       G TYY++   KK+Q+E P
Sbjct: 327 DDELPYGWEKVDDPKYG-TYYIDHINKKTQFENP 359


>SB_21992| Best HMM Match : LRR_1 (HMM E-Value=3.2e-07)
          Length = 534

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 15  LRKRKNLLAFPAQRTNDMASTQEEILPEGWEARKSRST 128
           LR++++LLA    R  +MAST +E L   W+ +   ST
Sbjct: 200 LREKEDLLAEEQYRKEEMASTTDEDLLRIWDEKPVTST 237


>SB_10355| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0037)
          Length = 1127

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +2

Query: 323  TKEEALDILQEYRRKIIDREAKFEELASTYSDCSSAKRDGDL 448
            ++ E LD++QE ++ + +RE + ++L    +D  S  +  DL
Sbjct: 1046 SRTEDLDLIQELKQMLAERELEMKKLLRNMNDLRSQNKRRDL 1087


>SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10)
          Length = 1514

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +2

Query: 302  REEHITRTKEEALDILQEYRRKIIDREAKFEELASTYSDCSSAKRDGDLGRFKKG 466
            +EE +T  +E+ L  ++  +RK++  EAK ++       C +  R+      K+G
Sbjct: 1434 QEESVTEDQEQLLAQVERLQRKVVSLEAKLQK-----QQCKNTSRENTSNANKRG 1483


>SB_59297| Best HMM Match : zf-DNL (HMM E-Value=0.68)
          Length = 629

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 326 KEEALDILQEYRRKIIDREAK-FEELASTYSDCSSAKRDGDLGRFKK 463
           + ++LD+  EYR  + D ++K F E+  TY  C S K    L +  K
Sbjct: 293 RSKSLDL--EYRYMVSDGDSKAFNEIWDTYGVCDSCKTHHSLDKSSK 337


>SB_23179| Best HMM Match : REV (HMM E-Value=4.8)
          Length = 125

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +2

Query: 269 KHSGSRRPSSWREEHITRTKEEALDILQEYRRKIIDREAK-FEELASTYSD 418
           K    RR  + +EE  T+++E+ +++  E +RK++D   K  E+L +  SD
Sbjct: 31  KRKNERRKKA-QEELQTKSREKMIEVRAENKRKMLDEMRKQTEQLEALQSD 80


>SB_26933| Best HMM Match : CXC (HMM E-Value=0.0082)
          Length = 842

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +2

Query: 332 EALDI-LQEYRRKIIDREAK-FEELASTYSDCSSAKRDGDLGRFKK 463
           E  DI  Q YR  + D ++K F E+  TY  C S K    L +  K
Sbjct: 506 EIFDIPCQTYRYMVSDADSKAFNEIWDTYGVCDSCKTHHSLDKSSK 551


>SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004)
          Length = 969

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +2

Query: 302 REEHITRTKEEALDILQEYRRKIIDREAKFEELASTYSDCSSAKRDGD--LGRFKKGQMQ 475
           +EE I R +EE  ++        + REA   ELA      S +KR+ +  L  +KK   +
Sbjct: 648 KEEAIRRMEEELQELKASNNDAQLAREAAKAELAKLEQSVSESKREREAALAEYKKQAEE 707

Query: 476 K 478
           K
Sbjct: 708 K 708


>SB_2996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 68

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 287 RPSSWREEHITRTKEEALDILQEYRRKIIDREAK 388
           RP+ + EE + + K+E  D ++E + K++ R  K
Sbjct: 34  RPTKFLEEELAKRKQEKQDRMREEKLKLLQRITK 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,440,345
Number of Sequences: 59808
Number of extensions: 408390
Number of successful extensions: 999
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)