Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0331
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 105 8e-24
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 48 1e-06
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 37 0.003
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 35 0.013
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 33 0.052
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 31 0.12
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 31 0.21
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 30 0.28
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 30 0.28
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 30 0.37
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 30 0.37
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 29 0.48
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.48
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 29 0.64
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 29 0.85
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 29 0.85
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 28 1.1
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 28 1.5
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 27 2.0
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.0
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 27 2.0
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ... 27 2.0
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 27 2.6
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|... 26 4.5
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 26 4.5
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 26 6.0
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 6.0
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 26 6.0
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 26 6.0
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 25 7.9
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 25 7.9
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 25 7.9
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 7.9
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 105 bits (251), Expect = 8e-24
Identities = 43/61 (70%), Positives = 53/61 (86%)
Frame = +1
Query: 511 SPMENKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPITFLLVAGSADF 690
SP E+KFAVGSGAR+IS+CYFE+EN+WWVSKH+K+P+RST+ S+DWHP LL AG AD
Sbjct: 109 SPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADR 168
Query: 691 K 693
K
Sbjct: 169 K 169
Score = 99 bits (238), Expect = 3e-22
Identities = 43/78 (55%), Positives = 55/78 (70%)
Frame = +2
Query: 284 NEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWAT 463
N+V +Y+++GN WK +HD V +DWAP +NRIVTCS DRNAYV+ + DG W
Sbjct: 33 NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQ 92
Query: 464 TLVLLRINRAATCVKGLP 517
TLVLLR+NRAAT V+ P
Sbjct: 93 TLVLLRLNRAATFVRWSP 110
Score = 31.5 bits (68), Expect = 0.12
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 299 YKKEGNDWKQTNNLVEHDLR--VMGIDWAPNTNRIVTCSVDRNAYV 430
Y ++ NDW + +L + LR ++ +DW PN + DR AYV
Sbjct: 128 YFEQENDWWVSKHL-KRPLRSTILSLDWHPNNVLLAAGCADRKAYV 172
Score = 26.6 bits (56), Expect = 3.4
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Frame = +2
Query: 257 SQIAFSPNNNEVHIYKKEGN-DWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 433
++I + ++Y+K + WKQT L+ + + W+PN ++ S R V
Sbjct: 68 NRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVC 127
Query: 434 TQGDDGKWATTLVLLRINRAATCVKGLPW 520
+ W + L R R+ + L W
Sbjct: 128 YFEQENDWWVSKHLKRPLRST--ILSLDW 154
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 48.0 bits (109), Expect = 1e-06
Identities = 27/93 (29%), Positives = 46/93 (49%)
Frame = +2
Query: 263 IAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQG 442
+A + ++ V I +K +DW+ T L H+ V I W+ N N + TCS D++ ++W
Sbjct: 349 LAVASFDSVVSINEKIDDDWECTAALEGHENEVKCIAWSCNGNYLATCSRDKSVWIWEAT 408
Query: 443 DDGKWATTLVLLRINRAATCVKGLPWRTSLLSG 541
+D ++ VL + V P L+SG
Sbjct: 409 EDDEFDCLAVLQEHTQDVKVVTWHPTEDLLVSG 441
Score = 39.1 bits (87), Expect = 6e-04
Identities = 18/72 (25%), Positives = 34/72 (47%)
Frame = +2
Query: 281 NNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWA 460
+N + ++ +G+DW T L H V + ++PN N + + D N ++W + +
Sbjct: 444 DNSICFWRDDGDDWALTCQLQGHTNTVWALAFSPNGNTLASADNDGNVFLWIKISSNEDV 503
Query: 461 TTLVLLRINRAA 496
T+ I R A
Sbjct: 504 ATIDSTNILRPA 515
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +2
Query: 338 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW-TQGDDGKWATTLVL 475
L EH V + W P + +V+ S D + W GDD WA T L
Sbjct: 419 LQEHTQDVKVVTWHPTEDLLVSGSYDNSICFWRDDGDD--WALTCQL 463
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 36.7 bits (81), Expect = 0.003
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Frame = +2
Query: 251 G*SQIAFSPNNNEVHIYKKEG--NDWKQTNNLVEHDLRVMGIDWAPNTNR----IVTCSV 412
G ++A + +N V I+ + N+W + L H + WAP+ + + S
Sbjct: 170 GPKKLATAGCDNLVKIWAFDAGVNNWILEDTLAGHVDWTRDVAWAPSVGLTKTYLASASQ 229
Query: 413 DRNAYVWTQGDDGKWATT 466
D+N ++WT+ DG W T
Sbjct: 230 DKNVFIWTKEGDGPWQKT 247
Score = 29.5 bits (63), Expect = 0.48
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = +2
Query: 263 IAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNT-NRIVTC-SVDRNAYVWT 436
+A + + V ++++ G W + + H V + WAP+ ++ C S D V
Sbjct: 70 LASASYDGHVIVWRETGGVWSELMDHTAHQASVNAVSWAPHEYGALLACASSDGKVSVLE 129
Query: 437 QGDDGKWATTL 469
DDG T +
Sbjct: 130 FKDDGSCDTRI 140
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 34.7 bits (76), Expect = 0.013
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +2
Query: 263 IAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 433
+A S +N V +Y + K NL H L V+ +D + ++ +VTCS D+N +W
Sbjct: 549 VAASLLDNTVKVYYLDS--LKFFLNLYGHKLPVLSMDISYDSKLLVTCSADKNVKIW 603
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 335 NLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLR 481
++ H +M + + P+T TCS DR W DGK ++ LR
Sbjct: 613 SIFAHQDSIMEVTFQPDTYNFFTCSKDREVRYW----DGKSFDLILKLR 657
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 32.7 bits (71), Expect = 0.052
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 338 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW-TQGDDGKWATT 466
L+ H+ VM +DW P I++ S D + VW + G W T
Sbjct: 264 LMGHEDWVMSVDWHPTKEMILSSSADSSMIVWEPDTNTGIWVVT 307
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +2
Query: 296 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQ-GDDGKW 457
++K++ W Q ++ H V G+ W P ++ D+ ++ + D W
Sbjct: 352 LWKQDAGQWLQLPSISGHTKSVKGVAWDPEGKFYLSAGTDQTTRLFARFKKDNAW 406
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 631 VTSIDWHPITFLLVAGSAD 687
V S+DWHP ++++ SAD
Sbjct: 271 VMSVDWHPTKEMILSSSAD 289
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +2
Query: 272 SPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 448
+P + + +Y E W Q L H L V I ++P+ I++ DR + Q ++
Sbjct: 554 TPEHAVIRLY--ETQSWNQQQVLKGHSLTVTTIKFSPDDRYILSAGRDRLVCLHEQAEN 610
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 31.5 bits (68), Expect = 0.12
Identities = 15/57 (26%), Positives = 32/57 (56%)
Frame = +2
Query: 263 IAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 433
+A S +++V IY+ + L EH V+ ++W+ + ++ + SVD++A V+
Sbjct: 45 LAASSWDSKVRIYEVQATGQSIGKALYEHQGPVLSVNWSRDGTKVASGSVDKSAKVF 101
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 30.7 bits (66), Expect = 0.21
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 344 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 448
EH+L +G+ W+ N+ + S D+N YVW+ D
Sbjct: 269 EHNL--LGVAWSRNSRFVGAGSSDKNVYVWSATGD 301
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 30.3 bits (65), Expect = 0.28
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +2
Query: 323 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 436
K +L H+ +V +DW+P+ R+ + D+ +W+
Sbjct: 464 KMKFDLPGHEDQVFAVDWSPDGQRVASGGADKAVRIWS 501
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 30.3 bits (65), Expect = 0.28
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +2
Query: 302 KKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 433
+K +W+ L+ HD + + W+ ++ +V+ +D + VW
Sbjct: 118 EKHTENWRSYRRLLGHDNDIQDLCWSYDSQLVVSVGLDSSIIVW 161
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 29.9 bits (64), Expect = 0.37
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +2
Query: 269 FSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQ 439
+S NN N+ Q ++L+ H V G+ +P I++CS D +W++
Sbjct: 376 YSSTNNGPQPLVGSQNEPLQKSSLIGHTRPVFGVSISPQKEFILSCSEDGFTRLWSK 432
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 29.9 bits (64), Expect = 0.37
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +2
Query: 296 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 433
+Y +G Q + H + I W+P++++ VT S + +W
Sbjct: 213 VYVFDGKTGDQVYEIDAHKGSIFSISWSPDSSQFVTSSAGYSCKIW 258
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/55 (23%), Positives = 22/55 (40%)
Frame = +2
Query: 263 IAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAY 427
+A N V I+ G D N + R+ +DW ++ RI+ + Y
Sbjct: 73 VASGDNQGNVRIWDCAGEDKILKNQVTAISGRITDLDWDGDSQRIIAVGEGKERY 127
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/56 (21%), Positives = 26/56 (46%)
Frame = +2
Query: 266 AFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 433
A + ++N ++ + G ++ +L H V + ++PN R + D YV+
Sbjct: 163 ATASDDNSINFF--HGTPYRFNRSLRVHSKFVYDVRYSPNDERFASAGADGKVYVF 216
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 29.5 bits (63), Expect = 0.48
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 323 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 433
K+ L+ H V I W+P+ +++CS D++ +W
Sbjct: 246 KRVFRLIGHIDTVAYIRWSPDDRYLLSCSCDKSVILW 282
>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 29.5 bits (63), Expect = 0.48
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Frame = -2
Query: 424 SITVNRTRNNTVGVGSPINPHHSKVVFHKVVCLLPVISF----LLVYVNFIIVW*ECNLT 257
+I ++T N V V I KV+ ++ LL + S L+ ++NF +++ + L+
Sbjct: 109 NILQDKTSVN-VNVNKLIPIPKKKVLKNRAKSLLSIKSHVHFHLIPFINFFLLYHQIILS 167
Query: 256 SSLFHA*HVIGAH 218
SLFH H+I H
Sbjct: 168 HSLFHISHLISFH 180
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 29.1 bits (62), Expect = 0.64
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 347 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 436
H VMG+ TN + +CS DR+ VW+
Sbjct: 249 HRDAVMGLAMRRGTNEMFSCSADRSIKVWS 278
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 28.7 bits (61), Expect = 0.85
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +2
Query: 287 EVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGK 454
+V+++ E N+++ N +H +P+ I SVD VW D K
Sbjct: 82 DVYVWNPETNEFRDLGNNAQHPSECWSSCISPDGQTIAFTSVDGRIAVWDNPSDCK 137
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 28.7 bits (61), Expect = 0.85
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 338 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 433
L EH +++ + W+PN ++ T S D +W
Sbjct: 345 LDEHIRQIVAMAWSPNGYQLATSSADDTVKIW 376
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 472 NKSSCPFPIISLSPDVSITVNRTRNNTVGVGSPINPH 362
NK S I SLSP ++ + N ++ +G+ +NPH
Sbjct: 408 NKESIKQRIPSLSPPITRSYNAKHRPSLVLGTSVNPH 444
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 347 HDLRVMGIDWAPNTNRIVTCSVDRNAYVW 433
H++ V + ++PN ++ VT S D + VW
Sbjct: 163 HEMEVRDVAFSPNDSKFVTASDDGSLKVW 191
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 631 VTSIDWHPITFLLVAGSAD 687
V ++DWHP LL +GS D
Sbjct: 209 VKTVDWHPSKGLLASGSKD 227
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 380 PNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL-LRINRAATCV 505
P +N IVTCS D ++W + + T+ L +++ ++ C+
Sbjct: 303 PPSNNIVTCSTDGLVHIWEPDMFSRPSETICLSSQVDSSSQCI 345
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = -2
Query: 502 ASRCSVDTQKNKSSCPFPIISLSPDVSITVNRTRNNTVGVGSPINPHHSKVVFH 341
A S T N + P PI +L PD T++ + ++ + +G+ PHHS + H
Sbjct: 142 ADNSSSSTTSNPNVAP-PISTL-PDPVATISSSSSSHLDMGAIHPPHHSSLPPH 193
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 338 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 436
L+ H V G ++P+ +++CS D +A +W+
Sbjct: 375 LLSHSGPVYGTTFSPDNKYLLSCSEDASARLWS 407
>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 568 YFEKENNWWVSKHIKKPIRSTVTSIDWHPITF 663
YF+++N W + K KK ++ ++TS+D + F
Sbjct: 30 YFDEDNIWDLDK-FKKNLKVSITSLDQETMVF 60
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 284 NEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPN 385
N+ +IYK+ + WK+ L H + I WAP+
Sbjct: 192 NDAYIYKQNSHGKWKKVAELPGHTDLIRDICWAPS 226
>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 539
Score = 26.2 bits (55), Expect = 4.5
Identities = 7/25 (28%), Positives = 17/25 (68%)
Frame = -2
Query: 349 VFHKVVCLLPVISFLLVYVNFIIVW 275
+FH V +L ++ + +++N++ VW
Sbjct: 245 IFHPVTYILAIVVPINIFLNYLFVW 269
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +2
Query: 290 VHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDG 451
+ +YK +G T + HD ++ + + + ++T S D +W++GD G
Sbjct: 369 LRVYKVDGKAPVSTVSHA-HDNSIVALRYNLRISLLLTASSDTTVKLWSRGDAG 421
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 347 HDLRVMGIDWAPNTNRIVTCSVDRNAYVW 433
H LR+ + + P N ++ S+D++ VW
Sbjct: 546 HSLRIYSVLYEPERNICISGSMDKSIRVW 574
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 433 PDVSITVNRTRNNTVGVGSPINPHHSKVVFHKVVCLLP 320
PD I R R+++ + I+PHHS+ + ++ +P
Sbjct: 472 PDSDICFTRRRSDSNRTWTVIDPHHSQSFDNDILAEIP 509
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 341 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 475
V H L ++ I + N + +DR VW D +W T LVL
Sbjct: 592 VHHQLDILKIAVSENYKTFASVGLDRCLVVW---DLRQWCTKLVL 633
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 25.8 bits (54), Expect = 6.0
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +3
Query: 186 KMAQTLTFGDSCAPITCHAWNKDEVKLHSHQTIMKFTYTRRKEMTGSKQTTLW 344
++ + L + SC H K E L H IMKFT +M+GS T ++
Sbjct: 1227 QLLEGLAYIHSCG--VSHQDVKPENILFDHNGIMKFTDFGSAKMSGSASTKIF 1277
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/60 (21%), Positives = 28/60 (46%)
Frame = +2
Query: 338 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKGLP 517
L H+ V+ ++++PN + +C D+ +W + K +L+ + CV+ P
Sbjct: 217 LAAHNGVVLCVNYSPNGVFLASCGRDKTIRIWDSTSNKK--KSLITINNVSPLNCVRWRP 274
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 7.9
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +2
Query: 410 VDRNAYVWTQGDDGKWATTLVLLRINRAATCVKGLPWRTSLLSGQ 544
VD+ A V G D WAT L RAA + L +S L GQ
Sbjct: 321 VDQTAVV--TGSDSMWATYLSQCLPKRAALGILSLTIVSSFLMGQ 363
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 7.9
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +1
Query: 532 AVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPITFLLVAGSAD 687
A S + I I FEK S K + V+SID++P+ LLV+GS D
Sbjct: 112 ASASDDKTIRIWDFEKR----CSVRCLKGHTNYVSSIDFNPLGTLLVSGSWD 159
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 368 IDWAPNTNRIVTCSVDRNAYVWTQGDDG 451
+DW+ N N +V +++RN YVW D G
Sbjct: 186 LDWS-NLN-VVAVALERNVYVW-NADSG 210
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,995,386
Number of Sequences: 5004
Number of extensions: 64229
Number of successful extensions: 234
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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