Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0331
(698 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26293| Best HMM Match : WD40 (HMM E-Value=1.1e-15) 39 0.004
SB_20681| Best HMM Match : WD40 (HMM E-Value=3.1e-16) 35 0.073
SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22) 32 0.51
SB_57808| Best HMM Match : WD40 (HMM E-Value=2.5e-22) 31 0.90
SB_7417| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7) 30 1.6
SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_20382| Best HMM Match : WD40 (HMM E-Value=1.7e-23) 29 2.7
SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_3357| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_54574| Best HMM Match : WD40 (HMM E-Value=0) 29 3.6
SB_22042| Best HMM Match : WD40 (HMM E-Value=6.1e-13) 29 3.6
SB_36508| Best HMM Match : WD40 (HMM E-Value=0.006) 29 4.8
SB_34582| Best HMM Match : PAP2 (HMM E-Value=0.013) 29 4.8
SB_11879| Best HMM Match : WD40 (HMM E-Value=5.8e-21) 29 4.8
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_14684| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_58261| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_30961| Best HMM Match : I-set (HMM E-Value=0) 28 6.3
SB_29629| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30) 28 6.3
SB_19094| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_37321| Best HMM Match : Pkinase (HMM E-Value=2.4e-27) 28 8.4
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_26293| Best HMM Match : WD40 (HMM E-Value=1.1e-15)
Length = 140
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Frame = +2
Query: 296 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPN----TNRIVTCSVDRNAYVWTQG-DDGKWA 460
++++ G W + L H V + WAPN T+ I +CS D +W++ ++G+
Sbjct: 20 MFRETGGQWVEEQKLEAHSDWVRDVAWAPNVGLPTSTIASCSQDCRVIIWSRNEEEGEGW 79
Query: 461 TTLVLLRIN 487
++ VL + N
Sbjct: 80 SSKVLKKFN 88
>SB_20681| Best HMM Match : WD40 (HMM E-Value=3.1e-16)
Length = 91
Score = 34.7 bits (76), Expect = 0.073
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 344 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATT 466
+H + + + + R+ TCS D++ VW G+DG+W T
Sbjct: 10 DHKDLIHDVSYDFHGRRMATCSSDQSVKVWDLGEDGEWRCT 50
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 308 EGNDWKQTNNLVEHDLRVMGIDWA-PNTNRIV-TCSVDRNAYVWTQ 439
E +W+ T N H V + WA P +++ +CS DR VW +
Sbjct: 43 EDGEWRCTANWKTHSGSVWKVTWAHPEFGQVLASCSFDRTVAVWEE 88
>SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)
Length = 874
Score = 31.9 bits (69), Expect = 0.51
Identities = 12/52 (23%), Positives = 27/52 (51%)
Frame = +2
Query: 278 NNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 433
+ N + +Y ++ NL H+ +V + W+ + ++I++C +D Y W
Sbjct: 252 HGNVIQLYSS--TTFENVGNLKGHNGKVRQVIWSQDDSKIISCGMDGAVYEW 301
>SB_57808| Best HMM Match : WD40 (HMM E-Value=2.5e-22)
Length = 195
Score = 31.1 bits (67), Expect = 0.90
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +1
Query: 511 SPMENKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPITFLLVAGSAD 687
SP +NK+A + L+ I F + + + + + V IDWHP LLV+GS D
Sbjct: 122 SPTDNKYASCADDGLVKIWDFYR----CMEEKTLRGHGADVKCIDWHPHKSLLVSGSKD 176
>SB_7417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 371 DWAPNTN-RIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKGLP-WR 523
DW NT+ + + + + GD K T L+L R+ R A C GLP WR
Sbjct: 8 DWRWNTHDNYINSPIPPSLLILCLGDK-KAVTILLLGRLRRGAVCTLGLPFWR 59
>SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)
Length = 540
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 317 HFLPSCICELHYCLVRMQFDFILVP 243
H SC+C LH L+ M FD +L+P
Sbjct: 361 HIACSCLCVLHRVLMSMCFDRVLMP 385
>SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 622
Score = 29.9 bits (64), Expect = 2.1
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +2
Query: 320 WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 433
W+ + L +H V+ + W+P+ + + + SVD +W
Sbjct: 78 WRCVHTLRQHSGDVLDLAWSPDDSFLASGSVDNTVTIW 115
>SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 544
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Frame = +2
Query: 278 NNNEVHIYK----KEGNDWKQTNNL---VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 436
N N + ++K K+G T V H ++ I A N I++CS D +W
Sbjct: 168 NGNTIRVFKVSKKKDGTGTTITGEFDFPVRHKAEIINIAVASNGKYIMSCSKDTTIIIWD 227
Query: 437 QGDDGKWATTLVLLRINRA 493
G+ TL L+IN +
Sbjct: 228 L--KGEVLATLDTLQINNS 244
>SB_20382| Best HMM Match : WD40 (HMM E-Value=1.7e-23)
Length = 437
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 335 NLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 433
+L H L VM +D + ++ IVT S D+N +W
Sbjct: 241 SLYGHKLPVMAMDISSDSTLIVTGSADKNIKIW 273
>SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 459
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/47 (27%), Positives = 19/47 (40%)
Frame = +2
Query: 308 EGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 448
+ N W H + +DW N N +CS D+ +V G D
Sbjct: 215 DANTWDVKQQFAFHQAPTLDVDW-QNNNSFASCSTDKLIHVCRLGLD 260
>SB_3357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1228
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 275 PNNNEVHIYKKEG-NDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 433
P ++E+ KKE N KQ H RV+G++ + + +VT S D + VW
Sbjct: 827 PPDDEMTEKKKEPKNVIKQVVCWRAHLTRVVGVEHVDSADAVVTASTDLSVRVW 880
>SB_54574| Best HMM Match : WD40 (HMM E-Value=0)
Length = 1050
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 341 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 433
V H V ++P+ + V+CS DR VW
Sbjct: 591 VGHTQEVFSCSFSPDDTKAVSCSADRTVKVW 621
>SB_22042| Best HMM Match : WD40 (HMM E-Value=6.1e-13)
Length = 232
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +2
Query: 263 IAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQG 442
+A N+N++ +Y E D + H ++ +D + +IVT S D VW
Sbjct: 150 LAVVTNSNQLRLYNLETLDCRMVEG---HSKMILCLDVCADGTKIVTGSKDHTVRVWDVS 206
Query: 443 D 445
D
Sbjct: 207 D 207
>SB_36508| Best HMM Match : WD40 (HMM E-Value=0.006)
Length = 1103
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +2
Query: 341 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGD 445
V+ ++ +M I W+ +T+RI+T + +W+ G+
Sbjct: 545 VKGNVAIMSIQWSKDTSRILTLNSQGTVELWSVGN 579
>SB_34582| Best HMM Match : PAP2 (HMM E-Value=0.013)
Length = 279
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = -2
Query: 355 KVVFHK-VVCLLPVISFLLVYVNFIIV 278
KV F + ++ LP ISFLL+Y N+ I+
Sbjct: 16 KVPFKQMIIAFLPFISFLLIYSNYRII 42
>SB_11879| Best HMM Match : WD40 (HMM E-Value=5.8e-21)
Length = 447
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 308 EGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 448
+ N WKQ +L H L V I ++ + RI++ S DR+ V+ D
Sbjct: 235 DANIWKQVCSLPGHSLTVTQIAFSHSGQRILSVSRDRSWAVFRLRQD 281
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 278 NNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRI 397
+NNEV + K D +NN VE+D + ID + N +
Sbjct: 1609 SNNEVELAKSTNIDKLVSNNEVEYDAKSTNIDKLVSNNEV 1648
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +2
Query: 344 EHDLRVMGIDWAPNT--NRIVTCSVDRNAYVWTQGDDG 451
EHD V + W+ N + +CS DR +W + G
Sbjct: 3103 EHDGPVWQVSWSHPMFGNLLASCSYDRKVIIWKESSSG 3140
>SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +2
Query: 293 HIYKKEGND---WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 433
HI E ++ W + L H V + W+P+ ++++ SVD +A +W
Sbjct: 158 HILDDENDNLETWTVSKMLRGHIEDVYDLAWSPDGTQLLSGSVDNSAIIW 207
>SB_14684| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = -2
Query: 355 KVVFHK-VVCLLPVISFLLVYVNFIIV 278
KV F + ++ LP ISFLL+Y N+ I+
Sbjct: 60 KVPFKQMIIAFLPFISFLLIYSNYRII 86
>SB_58261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 69
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 446 DGKWATTLVLLRINRAATCVKGLP-WR 523
D K T L+L R+ R A C GLP WR
Sbjct: 33 DKKAVTILLLGRLRRGAVCTLGLPFWR 59
>SB_30961| Best HMM Match : I-set (HMM E-Value=0)
Length = 1018
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = -2
Query: 448 IISLSPDVSITVNRTRNNTV 389
I ++SPDVS+T+NRT + T+
Sbjct: 671 ITAISPDVSVTINRTDSVTL 690
>SB_29629| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 264
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 263 IAFSPNNNEVHIYKKEGNDWK 325
I F PN + H Y+K+G WK
Sbjct: 184 IRFDPNPSIAHRYRKQGRPWK 204
>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
Length = 1093
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +2
Query: 347 HDLRVMGIDWAP-NTNRIVTCSVDRNAYVW 433
H V +DW P TN + +CS+D + VW
Sbjct: 203 HTSGVNRLDWNPVYTNLLASCSMDNSVRVW 232
>SB_19094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +2
Query: 260 QIAFSPNNNEVHIYKKEGNDWKQTN--NLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 433
+I +N V I+ + G+ N +L EHD V + +RI++ S DR+ VW
Sbjct: 55 RIVVGSDNGAVDIWSQSGSLLGLENLASLKEHDNVVSSVSVDCEKSRIISASWDRSIKVW 114
>SB_37321| Best HMM Match : Pkinase (HMM E-Value=2.4e-27)
Length = 592
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 460 CPFPIISLSPDVSITVNRTRNNTVGVGSPINPHHSKVVFHKVVCL 326
CP+ S SP V+ T RTR+ T+ + S V H++ CL
Sbjct: 405 CPYAP-STSPRVTSTTFRTRHRTLSARFFSDVPESHVYVHRISCL 448
>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 338 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 436
+ +HD +++ W P V+ S DR A +WT
Sbjct: 1273 VAQHDDKMIQCRWHPFLMAFVSSSADRTARLWT 1305
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,070,828
Number of Sequences: 59808
Number of extensions: 476966
Number of successful extensions: 1348
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1343
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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