Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0331
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110501-4|CAB54510.1| 368|Caenorhabditis elegans Hypothetical ... 108 4e-24
AL034393-7|CAA22322.2| 337|Caenorhabditis elegans Hypothetical ... 38 0.009
AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical... 37 0.012
Z81099-1|CAB03187.1| 600|Caenorhabditis elegans Hypothetical pr... 34 0.085
Z35663-5|CAA84727.1| 681|Caenorhabditis elegans Hypothetical pr... 34 0.085
AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily a... 33 0.15
U42835-4|AAA83588.1| 611|Caenorhabditis elegans Uncoordinated p... 33 0.20
AF324437-1|AAK11613.1| 611|Caenorhabditis elegans UNC-78 protein. 33 0.20
Z80215-3|CAB02270.1| 496|Caenorhabditis elegans Hypothetical pr... 32 0.34
U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical pr... 32 0.45
U42835-5|AAO61444.1| 517|Caenorhabditis elegans Uncoordinated p... 30 1.4
U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical pr... 30 1.4
AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical... 30 1.4
U58762-2|AAK39302.1| 722|Caenorhabditis elegans Hypothetical pr... 30 1.8
U58762-1|AAK39301.1| 732|Caenorhabditis elegans Hypothetical pr... 30 1.8
AL021481-1|CAA16333.1| 363|Caenorhabditis elegans Hypothetical ... 30 1.8
U21321-1|AAG00051.1| 507|Caenorhabditis elegans Fizzy (cdc20 pr... 29 3.2
Z81531-5|CAB04319.1| 1152|Caenorhabditis elegans Hypothetical pr... 28 5.6
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 28 5.6
Z31590-4|CAD27606.1| 495|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z31590-3|CAD27605.1| 607|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z31590-2|CAD27604.1| 538|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z31590-1|CAA83461.1| 605|Caenorhabditis elegans Hypothetical pr... 28 7.4
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 28 7.4
AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore... 28 7.4
Z83120-6|CAB76722.1| 809|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical p... 27 9.8
Z81485-3|CAB03977.1| 258|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z79756-4|CAB02116.2| 478|Caenorhabditis elegans Hypothetical pr... 27 9.8
U23176-7|AAC46713.4| 454|Caenorhabditis elegans Hypothetical pr... 27 9.8
U21322-6|AAN65314.2| 669|Caenorhabditis elegans Hypothetical pr... 27 9.8
U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical pr... 27 9.8
AC024214-18|AAF36083.1| 211|Caenorhabditis elegans Nuclear pore... 27 9.8
>AL110501-4|CAB54510.1| 368|Caenorhabditis elegans Hypothetical
protein Y79H2A.6 protein.
Length = 368
Score = 108 bits (259), Expect = 4e-24
Identities = 45/61 (73%), Positives = 52/61 (85%)
Frame = +1
Query: 511 SPMENKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPITFLLVAGSADF 690
SP+ENKFAVGSGA+L+S+CY+EKEN+WWVSK IKKPIRSTVT +DWH LL GS DF
Sbjct: 111 SPLENKFAVGSGAKLVSVCYYEKENDWWVSKQIKKPIRSTVTCLDWHSNNVLLAVGSCDF 170
Query: 691 K 693
K
Sbjct: 171 K 171
Score = 99.5 bits (237), Expect = 2e-21
Identities = 46/95 (48%), Positives = 60/95 (63%)
Frame = +2
Query: 257 SQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 436
+QIA S ++N++HI++ DW+ + L EHDL V G+DW TNRIV+CS D+NA+VWT
Sbjct: 27 TQIAVSASSNDIHIFEWRNGDWQSIHTLSEHDLPVTGLDWGTKTNRIVSCSQDKNAFVWT 86
Query: 437 QGDDGKWATTLVLLRINRAATCVKGLPWRTSLLSG 541
D W LVL+R NRAAT VK P G
Sbjct: 87 -FDKNVWKPELVLVRFNRAATYVKWSPLENKFAVG 120
Score = 31.5 bits (68), Expect = 0.60
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3
Query: 225 PITCHAWNKDEVKL 266
PITCHAWNKD ++
Sbjct: 16 PITCHAWNKDRTQI 29
>AL034393-7|CAA22322.2| 337|Caenorhabditis elegans Hypothetical
protein Y18D10A.9 protein.
Length = 337
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/62 (24%), Positives = 34/62 (54%)
Frame = +2
Query: 290 VHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 469
V +Y++E ++ + N L H+ V ++ + + TCS D++ + W Q +D ++ +
Sbjct: 91 VVVYQQEDGEFAEVNKLEGHESEVKCAVFSKSDEFLATCSRDKSVWFWQQDEDEDFSVSS 150
Query: 470 VL 475
+L
Sbjct: 151 IL 152
>AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical
protein Y111B2A.17 protein.
Length = 778
Score = 37.1 bits (82), Expect = 0.012
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +2
Query: 314 NDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQ 439
++W + + ++ H L V I W P+ R++T S DR A ++T+
Sbjct: 596 SNWSKKSEIIGHQLTVTQIAWNPSGTRLLTVSRDRTAKLYTE 637
>Z81099-1|CAB03187.1| 600|Caenorhabditis elegans Hypothetical
protein K08F9.2 protein.
Length = 600
Score = 34.3 bits (75), Expect = 0.085
Identities = 16/72 (22%), Positives = 33/72 (45%)
Frame = +2
Query: 332 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKG 511
N+ H +V+ + W+P+ R+ T S+D + +W G+ + + V+
Sbjct: 519 NSWTFHTSKVLTVAWSPDNQRLATGSIDTSVIIWDMKKPGEHPVIIKGAHPMSSVNVVRW 578
Query: 512 LPWRTSLLSGQE 547
L T + +GQ+
Sbjct: 579 LDETTVVSAGQD 590
Score = 31.1 bits (67), Expect = 0.79
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 341 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 433
V H + + W+P+ +RI T S D++ +W
Sbjct: 234 VAHTGSIFALAWSPDQSRIATASADKSVKIW 264
>Z35663-5|CAA84727.1| 681|Caenorhabditis elegans Hypothetical
protein T04A8.7a protein.
Length = 681
Score = 34.3 bits (75), Expect = 0.085
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +2
Query: 314 NDWKQTNNLVEHDLRVMGIDWAPNTNRIVTC----SVDRNAYVWTQGDDGKWATTL 469
+ +KQ V+ D V G++WAP ++ + D+NA V+ + + GKW+ T+
Sbjct: 51 SSYKQFGLNVQPDNSVKGLEWAPAAEKLALIGDFNNWDQNANVYKKEEHGKWSITV 106
>AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily
assigned gene nameprotein 305 protein.
Length = 869
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 299 YKKEGNDWKQTN-NLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLV 472
+K +D + N NL H + + W + +++ +C YVW + DD +W+ LV
Sbjct: 51 FKPTPDDLTRYNFNLRGHHNAIRMVTWNKSQSKLASCDASGIIYVWVRNDD-RWSVELV 108
>U42835-4|AAA83588.1| 611|Caenorhabditis elegans Uncoordinated
protein 78, isoform a protein.
Length = 611
Score = 33.1 bits (72), Expect = 0.20
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +2
Query: 329 TNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVK 508
TN+ H +V + W+P+ R+ T S+D + VW K + ++++ A + V
Sbjct: 529 TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM---NKPSDHPIIIKGAHAMSSVN 585
Query: 509 GLPW--RTSLLS-GQE 547
+ W T+++S GQ+
Sbjct: 586 SVIWLNETTIVSAGQD 601
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 341 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 433
V H V G+ W+P+ +I + S D+ +W
Sbjct: 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIW 266
>AF324437-1|AAK11613.1| 611|Caenorhabditis elegans UNC-78 protein.
Length = 611
Score = 33.1 bits (72), Expect = 0.20
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +2
Query: 329 TNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVK 508
TN+ H +V + W+P+ R+ T S+D + VW K + ++++ A + V
Sbjct: 529 TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM---NKPSDHPIIIKGAHAMSSVN 585
Query: 509 GLPW--RTSLLS-GQE 547
+ W T+++S GQ+
Sbjct: 586 SVIWLNETTIVSAGQD 601
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 341 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 433
V H V G+ W+P+ +I + S D+ +W
Sbjct: 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIW 266
>Z80215-3|CAB02270.1| 496|Caenorhabditis elegans Hypothetical
protein C36B1.5 protein.
Length = 496
Score = 32.3 bits (70), Expect = 0.34
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 320 WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGD 445
W+ L HD R++ +D +P+ + + + DR +W Q D
Sbjct: 454 WQPLRQLQGHDTRILCVDISPDGQWMCSSAFDRTFKLWAQSD 495
>U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical
protein T10F2.4 protein.
Length = 492
Score = 31.9 bits (69), Expect = 0.45
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 320 WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 436
W + +L +H V G+ + N +VTCS+D++ V++
Sbjct: 453 WSEVVSLSDHSGPVTGVRFGENARSLVTCSLDKSLRVFS 491
>U42835-5|AAO61444.1| 517|Caenorhabditis elegans Uncoordinated
protein 78, isoform b protein.
Length = 517
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 341 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 433
V H V G+ W+P+ +I + S D+ +W
Sbjct: 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIW 266
>U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical
protein F13H8.2 protein.
Length = 929
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +2
Query: 281 NNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 433
NN +Y N K +L H L V +D AP++ VT SVD++ VW
Sbjct: 565 NNTCSVYFV--NTLKFFVSLYGHSLPVTCVDIAPSSKLCVTGSVDKSVKVW 613
>AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical
protein Y110A7A.8 protein.
Length = 504
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -2
Query: 445 ISLSPDVSITV-NRTRNNTVGVGS-PINPHHSKVVFHKVVCLLP 320
++ P ++ V +T+ N +G + NPHH + FH++V +P
Sbjct: 250 LATMPSCNVQVLGKTKKNLIGFSTVSTNPHHGFIYFHQLVQKMP 293
>U58762-2|AAK39302.1| 722|Caenorhabditis elegans Hypothetical
protein T27F7.2b protein.
Length = 722
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = -1
Query: 698 RTLKSAEPATSKNVIGCQSIDVTVERMGFLICLDTHQLFSFSK*QI-DINLAPDPTANL 525
R + S +P TS G QS+++++ +G IC + L S S ++ DI+ PD T N+
Sbjct: 165 RRIDSFQPTTSG---GMQSVELSISVLGVKICCEKTVLMSHSLRRVTDISARPD-TQNI 219
>U58762-1|AAK39301.1| 732|Caenorhabditis elegans Hypothetical
protein T27F7.2a protein.
Length = 732
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = -1
Query: 698 RTLKSAEPATSKNVIGCQSIDVTVERMGFLICLDTHQLFSFSK*QI-DINLAPDPTANL 525
R + S +P TS G QS+++++ +G IC + L S S ++ DI+ PD T N+
Sbjct: 175 RRIDSFQPTTSG---GMQSVELSISVLGVKICCEKTVLMSHSLRRVTDISARPD-TQNI 229
>AL021481-1|CAA16333.1| 363|Caenorhabditis elegans Hypothetical
protein Y43F4B.4 protein.
Length = 363
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 302 KKEGNDWKQTNNLVEHDLRVMGIDWA-PNTNRIV-TCSVDRNAYVWTQ 439
K +GN W+++ + H V + WA P +IV TCS DR +W +
Sbjct: 47 KPDGN-WRRSAHWKCHGGAVWRVIWAHPEFGQIVATCSYDRTIVIWEE 93
Score = 29.5 bits (63), Expect = 2.4
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +2
Query: 368 IDWAPNTNRIVTCSVDRNAYVWTQGDDGKW 457
+ + P+ R+ TC+ D +W + DG W
Sbjct: 23 VSFDPHGRRMATCASDMTMAIWDRKPDGNW 52
>U21321-1|AAG00051.1| 507|Caenorhabditis elegans Fizzy (cdc20
protein family) homologprotein 1 protein.
Length = 507
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 281 NNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 433
N++V I + + W N H V ++W+ + N V+ S DR A +W
Sbjct: 295 NHDVRISQHVVSSWGGDNG---HCRDVTALEWSADENMCVSGSSDRTAKIW 342
>Z81531-5|CAB04319.1| 1152|Caenorhabditis elegans Hypothetical protein
F36D3.5 protein.
Length = 1152
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 293 HIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 448
HI+ E D K TN+ +E + + APNT ++ D N + T D
Sbjct: 931 HIWMDERTDNKITNDFMEKFQAITSDEAAPNTTHVIV-KTDENGVLETDDLD 981
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 454 MGNYSCSSAYQPSSDLRERSPMENKFAVGSGARLISICYFEKE 582
+G C S Y+PSSD R + +++ V S + + C F+ E
Sbjct: 1918 IGTCLCDSGYEPSSD-RSSCVLNDRYNVRSRSYPKTFCTFDSE 1959
>Z31590-4|CAD27606.1| 495|Caenorhabditis elegans Hypothetical
protein R01H10.3d protein.
Length = 495
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 347 HDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQGDDG 451
H + + W+P N N I +CS D VW D G
Sbjct: 78 HKAPCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRG 113
>Z31590-3|CAD27605.1| 607|Caenorhabditis elegans Hypothetical
protein R01H10.3c protein.
Length = 607
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 347 HDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQGDDG 451
H + + W+P N N I +CS D VW D G
Sbjct: 78 HKAPCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRG 113
>Z31590-2|CAD27604.1| 538|Caenorhabditis elegans Hypothetical
protein R01H10.3b protein.
Length = 538
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 347 HDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQGDDG 451
H + + W+P N N I +CS D VW D G
Sbjct: 78 HKAPCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRG 113
>Z31590-1|CAA83461.1| 605|Caenorhabditis elegans Hypothetical
protein R01H10.3a protein.
Length = 605
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 347 HDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQGDDG 451
H + + W+P N N I +CS D VW D G
Sbjct: 78 HKAPCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRG 113
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +3
Query: 177 VK*KMAQTLTFGDSCAPITCHAWNKDEVKLHSHQTIMKFTYTRRKEMTGSKQTTLWNTTL 356
+K K + + T DS T A N DEV + +++ T ++ T ++TT TT
Sbjct: 771 LKEKESTSTTGSDSSETTTVVAENIDEVTTTEKEKVVQTTPITTEKSTTQEETTTTTTTT 830
Query: 357 E 359
E
Sbjct: 831 E 831
>AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore
complex protein protein20, isoform a protein.
Length = 313
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Frame = +2
Query: 299 YKKEGNDWKQTNNLVEHDLRVMGIDWAPNT------NRIVTCSVDRNAYVWTQGD 445
Y N+W + H+ V + WAP + R+V+ D+N +W D
Sbjct: 135 YDNSSNEWISSKIQKCHEQGVNSVCWAPGSADPAAKKRLVSAGNDKNVKIWAFDD 189
>Z83120-6|CAB76722.1| 809|Caenorhabditis elegans Hypothetical
protein R06A4.9 protein.
Length = 809
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +1
Query: 511 SPMENKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPITFLLVAGSAD 687
+P + KFA S + F + + + + + + V IDWHP L+ GS D
Sbjct: 226 APTDVKFATASDDGTARVWDFAR----YTEERVLRGHGAEVRCIDWHPTKGLIATGSRD 280
>Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical
protein F26D2.10 protein.
Length = 1213
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 293 HIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 448
HI+ E D K TN+ +E + + APNT ++ D N + T D
Sbjct: 992 HIWMDEITDNKITNDFMEKFQAITSDEAAPNTTHVIV-KTDENGVLDTDNLD 1042
>Z81485-3|CAB03977.1| 258|Caenorhabditis elegans Hypothetical
protein C49F5.3 protein.
Length = 258
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -3
Query: 624 TNGLLNMLRHPPIIFLLKIAN*YQSSS*PDSKLVLHGRPFTQVAARLIRR 475
TNG+ N + P ++L +A+ YQ + ++ PFT VA IR+
Sbjct: 169 TNGISNQQMNYPSKWILNLADEYQKRTMVENIEGPRIHPFTSVACESIRK 218
>Z79756-4|CAB02116.2| 478|Caenorhabditis elegans Hypothetical
protein F53C11.7 protein.
Length = 478
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 338 LVEHDLRVMGIDWAPNT-NRIVTCSVDRNAYVW 433
L H+ + G+ WAP++ + I T D A +W
Sbjct: 398 LRNHEATINGLSWAPHSGSHICTAGDDYQALIW 430
>U23176-7|AAC46713.4| 454|Caenorhabditis elegans Hypothetical
protein F21H12.1 protein.
Length = 454
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 204 TFGDSCAPITCHAWNKDEVKL 266
TF C P++C +W++D KL
Sbjct: 62 TFSAHCLPVSCLSWSRDGRKL 82
>U21322-6|AAN65314.2| 669|Caenorhabditis elegans Hypothetical
protein K10D2.1b protein.
Length = 669
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +2
Query: 320 WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAAT 499
+K+ L H + V+ ++W+PN + + S+D ++ + K + +L N
Sbjct: 123 YKECCVLRGHSMEVLTVEWSPNGKYLASGSIDYRIIIY---NARKLPDRITVL--NDIQL 177
Query: 500 CVKGLPW 520
VKGL W
Sbjct: 178 PVKGLSW 184
>U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical
protein K10D2.1a protein.
Length = 1223
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +2
Query: 320 WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAAT 499
+K+ L H + V+ ++W+PN + + S+D ++ + K + +L N
Sbjct: 411 YKECCVLRGHSMEVLTVEWSPNGKYLASGSIDYRIIIY---NARKLPDRITVL--NDIQL 465
Query: 500 CVKGLPW 520
VKGL W
Sbjct: 466 PVKGLSW 472
>AC024214-18|AAF36083.1| 211|Caenorhabditis elegans Nuclear pore
complex protein protein20, isoform b protein.
Length = 211
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Frame = +2
Query: 299 YKKEGNDWKQTNNLVEHDLRVMGIDWAPNT------NRIVTCSVDRNAYVWTQGDDG 451
Y N+W + H+ V + WAP + R+V+ D+N +W G
Sbjct: 135 YDNSSNEWISSKIQKCHEQGVNSVCWAPGSADPAAKKRLVSAGNDKNVKIWALSQFG 191
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,608,442
Number of Sequences: 27780
Number of extensions: 364517
Number of successful extensions: 930
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -