Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0331
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31300.1 68415.m03821 transducin family protein / WD-40 repea... 96 2e-20
At2g30910.2 68415.m03768 transducin family protein / WD-40 repea... 96 2e-20
At2g30910.1 68415.m03767 transducin family protein / WD-40 repea... 96 2e-20
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea... 38 0.006
At3g01340.1 68416.m00051 protein transport protein SEC13 family ... 36 0.020
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 36 0.034
At2g30050.1 68415.m03654 transducin family protein / WD-40 repea... 36 0.034
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 36 0.034
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 33 0.14
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 33 0.18
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 33 0.18
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 33 0.24
At5g64630.3 68418.m08123 transducin family protein / WD-40 repea... 32 0.32
At5g64630.2 68418.m08122 transducin family protein / WD-40 repea... 32 0.32
At5g64630.1 68418.m08121 transducin family protein / WD-40 repea... 32 0.32
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 32 0.32
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 31 0.56
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 31 0.56
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 31 0.73
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 30 1.3
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 30 1.3
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 30 1.3
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 30 1.3
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 30 1.3
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 30 1.3
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 30 1.3
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 30 1.3
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 30 1.7
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 29 2.2
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 29 2.2
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 29 2.2
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 29 3.0
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 29 3.0
At4g00090.1 68417.m00009 transducin family protein / WD-40 repea... 29 3.0
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 29 3.9
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 29 3.9
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ... 29 3.9
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 28 5.2
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 28 5.2
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 28 5.2
At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5 ... 28 6.8
At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6 ... 27 9.0
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 27 9.0
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 27 9.0
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 27 9.0
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 27 9.0
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 27 9.0
>At2g31300.1 68415.m03821 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
identical to putative ARP2/3 protein complex subunit p41
(GI:4432825)[Arabidopsis thaliana]; similar to ARP2/3
complex 41 kDa subunit (P41-ARC) (Actin-related protein
2/3 complex subunit 1B) (SP:Q9WV32) [Mus musculus]
Length = 378
Score = 96.3 bits (229), Expect = 2e-20
Identities = 45/88 (51%), Positives = 60/88 (68%), Gaps = 1/88 (1%)
Frame = +2
Query: 257 SQIAFSPNNNEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 433
S +A PNN EVHIYK D W++ + L +HD V GIDW+ +N+IVT S DRN+YVW
Sbjct: 23 SMVALCPNNTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVW 82
Query: 434 TQGDDGKWATTLVLLRINRAATCVKGLP 517
+ + +W TLV+LR+NRAA CV+ P
Sbjct: 83 SL-EGAEWVPTLVILRLNRAALCVQWSP 109
Score = 87.0 bits (206), Expect = 1e-17
Identities = 38/61 (62%), Positives = 45/61 (73%)
Frame = +1
Query: 511 SPMENKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPITFLLVAGSADF 690
SP ENKFAVGSGA+ + ICY+E+ENNWWVSK I+K S+VTS+ WHP LL S D
Sbjct: 108 SPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDG 167
Query: 691 K 693
K
Sbjct: 168 K 168
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +2
Query: 299 YKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 436
Y++E N W H+ V + W PN + T S D V++
Sbjct: 128 YEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFS 173
>At2g30910.2 68415.m03768 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 96.3 bits (229), Expect = 2e-20
Identities = 45/88 (51%), Positives = 60/88 (68%), Gaps = 1/88 (1%)
Frame = +2
Query: 257 SQIAFSPNNNEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 433
S +A PNN EVHIYK D W++ + L +HD V GIDW+ +N+IVT S DRN+YVW
Sbjct: 23 SMVALCPNNTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVW 82
Query: 434 TQGDDGKWATTLVLLRINRAATCVKGLP 517
+ + +W TLV+LR+NRAA CV+ P
Sbjct: 83 SL-EGAEWVPTLVILRLNRAALCVQWSP 109
Score = 87.0 bits (206), Expect = 1e-17
Identities = 38/61 (62%), Positives = 45/61 (73%)
Frame = +1
Query: 511 SPMENKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPITFLLVAGSADF 690
SP ENKFAVGSGA+ + ICY+E+ENNWWVSK I+K S+VTS+ WHP LL S D
Sbjct: 108 SPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDG 167
Query: 691 K 693
K
Sbjct: 168 K 168
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +2
Query: 299 YKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT---QGDDGKWA 460
Y++E N W H+ V + W PN + T S D V++ +G D K+A
Sbjct: 128 YEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFSTFIKGVDTKYA 184
>At2g30910.1 68415.m03767 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 96.3 bits (229), Expect = 2e-20
Identities = 45/88 (51%), Positives = 60/88 (68%), Gaps = 1/88 (1%)
Frame = +2
Query: 257 SQIAFSPNNNEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 433
S +A PNN EVHIYK D W++ + L +HD V GIDW+ +N+IVT S DRN+YVW
Sbjct: 23 SMVALCPNNTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVW 82
Query: 434 TQGDDGKWATTLVLLRINRAATCVKGLP 517
+ + +W TLV+LR+NRAA CV+ P
Sbjct: 83 SL-EGAEWVPTLVILRLNRAALCVQWSP 109
Score = 87.0 bits (206), Expect = 1e-17
Identities = 38/61 (62%), Positives = 45/61 (73%)
Frame = +1
Query: 511 SPMENKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPITFLLVAGSADF 690
SP ENKFAVGSGA+ + ICY+E+ENNWWVSK I+K S+VTS+ WHP LL S D
Sbjct: 108 SPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDG 167
Query: 691 K 693
K
Sbjct: 168 K 168
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +2
Query: 299 YKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 436
Y++E N W H+ V + W PN + T S D V++
Sbjct: 128 YEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFS 173
>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
family protein contains 10 WD-40 repeats (PF00400);
similar to 66kDa stress protein (SWISS-PROT: P90587)[
Physarum polycephalum (Slime mold)]
Length = 474
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +2
Query: 347 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWAT---TLVLLRINRAATCVKGLP 517
H + + W+P++ R++T S D++A VW +DG + TL + A + G
Sbjct: 95 HKGSIYAVSWSPDSKRVLTVSADKSAKVWEVAEDGTIGSVIKTLSFMESGGAEDMLVGCL 154
Query: 518 WRTSLL 535
W+ L
Sbjct: 155 WQNDHL 160
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 281 NNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 433
N E ++ +E K NN++ H R+ + W+PN + T S+D V+
Sbjct: 377 NREAVVWDRETKQVK-LNNMLFHTARINSLAWSPNNKMVATGSIDTCVIVY 426
>At3g01340.1 68416.m00051 protein transport protein SEC13 family
protein / WD-40 repeat family protein similar to Protein
transport protein SEC13 SP|Q04491 {Saccharomyces
cerevisiae} and SEC13 (SP:P53024) [Pichia pastoris]
Length = 302
Score = 36.3 bits (80), Expect = 0.020
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = +2
Query: 305 KEGND--WKQTNNLVEHDLRVMGIDWAPNTNRI-VTCSV-DRNAYVWTQGDDGKWATTLV 472
KEGN W Q + +H + V I WAP+ + + C D N V++ DG W TT +
Sbjct: 86 KEGNQNQWTQAHVFTDHKVSVNSIAWAPHELGLSLACGASDGNISVFSARADGGWDTTKI 145
Score = 34.7 bits (76), Expect = 0.060
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +2
Query: 257 SQIAFSPNNNEVHIYK--KEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYV 430
S IA + +V I+ KEG W+ T L + V + W+ N + + N V
Sbjct: 227 STIASGSEDGKVIIWTIGKEGEQWEGTV-LKDFKTPVWRVSWSLTGNLLAVSDGNNNVTV 285
Query: 431 WTQGDDGKWATTLVL 475
W + DG+W V+
Sbjct: 286 WKESVDGEWEQVTVV 300
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 35.5 bits (78), Expect = 0.034
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 350 DLRVMGIDWAPNTNRIVTCSVDRNAYVW 433
DL+V +DW P NRIV+ S D VW
Sbjct: 3 DLQVYSLDWTPERNRIVSASQDGRLIVW 30
>At2g30050.1 68415.m03654 transducin family protein / WD-40 repeat
family protein similar to SEC13-related protein
(SP:P55735) [Homo sapiens]
Length = 302
Score = 35.5 bits (78), Expect = 0.034
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = +2
Query: 305 KEGND--WKQTNNLVEHDLRVMGIDWAPNTNRI-VTC-SVDRNAYVWTQGDDGKWATTLV 472
KEGN W Q + +H V I WAP+ + + C S D N V+T DG W T+ +
Sbjct: 86 KEGNQNQWTQDHVFTDHKSSVNSIAWAPHDIGLSLACGSSDGNISVFTARADGGWDTSRI 145
Score = 31.5 bits (68), Expect = 0.56
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +2
Query: 257 SQIAFSPNNNEVHIYK--KEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYV 430
S IA + +V I+ KEG W + L + V + W+ N + + N V
Sbjct: 227 STIASGSQDGKVIIWTVGKEGEQW-EGKVLKDFMTPVWRVSWSLTGNLLAVSDGNNNVTV 285
Query: 431 WTQGDDGKW 457
W + DG+W
Sbjct: 286 WKEAVDGEW 294
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +1
Query: 562 ICYFEKENNWWVSKHIKKPIRSTVTSIDW--HPITFLLVAGSAD 687
I + E N W H+ +S+V SI W H I L GS+D
Sbjct: 83 ILWKEGNQNQWTQDHVFTDHKSSVNSIAWAPHDIGLSLACGSSD 126
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 35.5 bits (78), Expect = 0.034
Identities = 14/60 (23%), Positives = 32/60 (53%)
Frame = +2
Query: 296 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 475
I+K G++++ + L H+ V + W + + + TCS D++ ++W + ++ VL
Sbjct: 100 IWKNYGSEFECISTLEGHENEVKSVSWNASGSCLATCSRDKSVWIWEVLEGNEYDCAAVL 159
Score = 35.1 bits (77), Expect = 0.045
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 308 EGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYV-WTQGDDGKW 457
EGN++ L H V + W P + + +CS D V W++ DDG++
Sbjct: 149 EGNEYDCAAVLTGHTQDVKMVQWHPTMDVLFSCSYDNTIKVWWSEDDDGEY 199
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 33.5 bits (73), Expect = 0.14
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +2
Query: 347 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 475
H + + W+P+ +++T S D++A +W D+G + L
Sbjct: 231 HKGSIYAVSWSPDGKQVLTVSADKSAKIWDISDNGSGSLNTTL 273
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 347 HDLRVMGIDWAPNTNRIVTCSVDRNAYVW 433
H +V +DW P NRIV+ S D VW
Sbjct: 64 HTGKVYSLDWTPERNRIVSASQDGRLIVW 92
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 347 HDLRVMGIDWAPNTNRIVTCSVDRNAYVW 433
H +V +DW P NRIV+ S D VW
Sbjct: 64 HTGKVYSLDWTPERNRIVSASQDGRLIVW 92
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 32.7 bits (71), Expect = 0.24
Identities = 20/82 (24%), Positives = 34/82 (41%)
Frame = +1
Query: 442 R*WEMGNYSCSSAYQPSSDLRERSPMENKFAVGSGARLISICYFEKENNWWVSKHIKKPI 621
R W + N SC+ Y+ S P K+ S A L+++ E + +H +
Sbjct: 762 RYWSINNGSCTRVYKGGSTQIRFQPRVGKYLAASSANLVNVLDVETQ----AIRHSLQGH 817
Query: 622 RSTVTSIDWHPITFLLVAGSAD 687
+ + S+ W P L + S D
Sbjct: 818 ANPINSVCWDPSGDFLASVSED 839
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 323 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDG 451
K L EH + I ++P+ R+ T S D+ VW + G
Sbjct: 684 KPKTTLEEHTAMITDIRFSPSQLRLATSSFDKTVRVWDADNKG 726
>At5g64630.3 68418.m08123 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 428
Score = 32.3 bits (70), Expect = 0.32
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +2
Query: 263 IAFSPNNNEVHIYK----KEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYV 430
+A + E+ I+K + WK +L H V+ + W+P+ +++ SVD + +
Sbjct: 20 LASGADGGELFIWKLHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCII 79
Query: 431 W 433
W
Sbjct: 80 W 80
>At5g64630.2 68418.m08122 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 487
Score = 32.3 bits (70), Expect = 0.32
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +2
Query: 263 IAFSPNNNEVHIYK----KEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYV 430
+A + E+ I+K + WK +L H V+ + W+P+ +++ SVD + +
Sbjct: 79 LASGADGGELFIWKLHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCII 138
Query: 431 W 433
W
Sbjct: 139 W 139
>At5g64630.1 68418.m08121 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 397
Score = 32.3 bits (70), Expect = 0.32
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +2
Query: 263 IAFSPNNNEVHIYK----KEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYV 430
+A + E+ I+K + WK +L H V+ + W+P+ +++ SVD + +
Sbjct: 79 LASGADGGELFIWKLHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCII 138
Query: 431 W 433
W
Sbjct: 139 W 139
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 32.3 bits (70), Expect = 0.32
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +2
Query: 317 DWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 433
+WK L H V+ ++W+P+ + + + S+D ++W
Sbjct: 107 NWKAVMTLRGHTADVVDLNWSPDDSMLASGSLDNTVHIW 145
Score = 29.9 bits (64), Expect = 1.7
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Frame = +2
Query: 257 SQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 436
S +A +N VHI+ T L H V G+ W P + I + S D+ +W
Sbjct: 131 SMLASGSLDNTVHIWNMRTG--MCTTVLRGHLSLVKGVTWDPIGSFIASQSDDKTVIIWR 188
Query: 437 QGD-------DGKWATTL 469
D DG WA +L
Sbjct: 189 TSDWGMAHRTDGHWAKSL 206
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 31.5 bits (68), Expect = 0.56
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = +2
Query: 347 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKGLPW 520
H V G+ W+ + ++ + D ++W + +TT L R+ + VK L W
Sbjct: 265 HTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEEHTSAVKALAW 322
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 31.5 bits (68), Expect = 0.56
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = +2
Query: 347 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKGLPW 520
H V G+ W+ + ++ + D ++W + +TT L R+ + VK L W
Sbjct: 255 HTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEEHTSAVKALAW 312
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 31.1 bits (67), Expect = 0.73
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 311 GNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT-QGDD 448
G D+ +L H+ +V +D +++ I T S DR +WT G+D
Sbjct: 495 GRDFSLVKSLAGHESKVASLDITADSSCIATVSHDRTIKLWTSSGND 541
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/59 (20%), Positives = 27/59 (45%)
Frame = +2
Query: 257 SQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 433
+ ++F+ ++ + IY + + + H V + W P + + +CS D A +W
Sbjct: 417 NNVSFATSSTDSMIYLCKIGETRPAKTFTGHQGEVNCVKWDPTGSLLASCSDDSTAKIW 475
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/69 (23%), Positives = 33/69 (47%)
Frame = +2
Query: 263 IAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQG 442
+A + ++ +V I+ E + T EH + + + PN+ ++ T S D+ +W
Sbjct: 523 LASAGHDKKVFIWNMETLQVESTPE--EHAHIITDVRFRPNSTQLATSSFDKTIKIWDAS 580
Query: 443 DDGKWATTL 469
D G + T+
Sbjct: 581 DPGYFLRTI 589
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/69 (23%), Positives = 33/69 (47%)
Frame = +2
Query: 263 IAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQG 442
+A + ++ +V I+ E + T EH + + + PN+ ++ T S D+ +W
Sbjct: 525 LASAGHDKKVFIWNMETLQVESTPE--EHAHIITDVRFRPNSTQLATSSFDKTIKIWDAS 582
Query: 443 DDGKWATTL 469
D G + T+
Sbjct: 583 DPGYFLRTI 591
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/69 (23%), Positives = 33/69 (47%)
Frame = +2
Query: 263 IAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQG 442
+A + ++ +V I+ E + T EH + + + PN+ ++ T S D+ +W
Sbjct: 525 LASAGHDKKVFIWNMETLQVESTPE--EHAHIITDVRFRPNSTQLATSSFDKTIKIWDAS 582
Query: 443 DDGKWATTL 469
D G + T+
Sbjct: 583 DPGYFLRTI 591
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/69 (23%), Positives = 33/69 (47%)
Frame = +2
Query: 263 IAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQG 442
+A + ++ +V I+ E + T EH + + + PN+ ++ T S D+ +W
Sbjct: 525 LASAGHDKKVFIWNMETLQVESTPE--EHAHIITDVRFRPNSTQLATSSFDKTIKIWDAS 582
Query: 443 DDGKWATTL 469
D G + T+
Sbjct: 583 DPGYFLRTI 591
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/69 (23%), Positives = 33/69 (47%)
Frame = +2
Query: 263 IAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQG 442
+A + ++ +V I+ E + T EH + + + PN+ ++ T S D+ +W
Sbjct: 525 LASAGHDKKVFIWNMETLQVESTPE--EHAHIITDVRFRPNSTQLATSSFDKTIKIWDAS 582
Query: 443 DDGKWATTL 469
D G + T+
Sbjct: 583 DPGYFLRTI 591
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 631 VTSIDWHPITFLLVAGSAD 687
+ S+D+HP+ FLL GSAD
Sbjct: 187 IRSLDFHPLEFLLATGSAD 205
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 631 VTSIDWHPITFLLVAGSAD 687
+ S+D+HP+ FLL GSAD
Sbjct: 136 IRSLDFHPLEFLLATGSAD 154
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +2
Query: 332 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWAT 463
+ L H +V I + +T+ ++T S D+ +W +DG + +
Sbjct: 258 STLTGHSKKVTSIKFVGDTDLVLTASSDKTVRIWGCSEDGNYTS 301
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +2
Query: 296 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW--TQGDDGKWATTL 469
+++ D + + L H+ V + W + + + TC D++ ++W +D ++ T
Sbjct: 74 VWENFATDSESVSVLRGHESEVKSVSWNASGSLLATCGRDKSVWIWEIQPEEDDEFDTIA 133
Query: 470 VL 475
VL
Sbjct: 134 VL 135
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +2
Query: 296 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW-TQGDDGKWATTLV 472
I +E +++ L H V + W P + + +CS D +W ++ +DG +
Sbjct: 121 IQPEEDDEFDTIAVLTGHSEDVKMVLWHPTMDVLFSCSYDNTIKIWCSEDEDGDYNCVQT 180
Query: 473 LLRIN 487
L +N
Sbjct: 181 LSELN 185
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 323 KQTNNLVEHDLRVMGIDWAPNTNRIV-TCSVDRNAYVWTQ 439
++ L H RV + W P + ++ +CS D+ +W Q
Sbjct: 11 EEVQKLEGHTDRVWNVAWNPAADGVIASCSADKTVRIWEQ 50
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +2
Query: 332 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWA 460
+ L H +V + + +++ ++T S D+ +W DG +A
Sbjct: 258 STLTGHSKKVTSVKFVGDSDLVLTASADKTVRIWRNPGDGNYA 300
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +2
Query: 332 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWA 460
+ L H +V + + +++ ++T S D+ +W DG +A
Sbjct: 258 STLTGHSKKVTSVKFVGDSDLVLTASADKTVRIWRNPGDGNYA 300
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 631 VTSIDWHPITFLLVAGSAD 687
V S+DWHP LLV+G D
Sbjct: 271 VKSVDWHPTKSLLVSGGKD 289
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 604 HIKKPIRSTVTSIDWHPITFLLVAGSAD 687
H K + S+D+HP FLL GSAD
Sbjct: 272 HEFKSHEGKIQSLDFHPHEFLLATGSAD 299
>At4g00090.1 68417.m00009 transducin family protein / WD-40 repeat
family protein similar to Transducin beta-like 2 protein
(WS beta-transducin repeats protein) (WS-betaTRP)
(Williams-Beuren syndrome chromosome region 13 protein)
(SP:Q9Y4P3) {Homo sapiens}
Length = 430
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +2
Query: 296 IYKKEGN--DWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 433
+Y+K+G+ + + L H V + ++PN+ +I+T S D + VW
Sbjct: 269 VYQKDGSVKEVSRVMQLKGHKSAVTWLCFSPNSEQIITASKDGSIRVW 316
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 323 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQG 442
K + + H ++ I W+ N NR+++ SVD + +W G
Sbjct: 347 KPLHEFLGHSGDILDISWSKN-NRLLSASVDNSVRLWQIG 385
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 323 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQG 442
K + + H ++ I W+ N NR+++ SVD + +W G
Sbjct: 347 KPLHEFLGHSGDILDISWSKN-NRLLSASVDNSVRLWQIG 385
>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
sapiens}; similar to WD repeat protein Srw1
-Schizosaccharomyces pombe,PID:d1023012
Length = 475
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/63 (23%), Positives = 26/63 (41%)
Frame = +2
Query: 332 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKG 511
+ L H + G+ W+ + + + D +VW Q +T +LR A VK
Sbjct: 286 SKLKGHKSEICGLKWSSDNRELASGGNDNKLFVWNQ------HSTQPVLRFCEHAAAVKA 339
Query: 512 LPW 520
+ W
Sbjct: 340 IAW 342
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 368 IDWAPNTNRIVTCSVDRNAYVW 433
+DW PN N I T S D+ +W
Sbjct: 505 VDWHPNCNYIATGSSDKTVRLW 526
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 631 VTSIDWHPITFLLVAGSAD 687
+ S+D+HP FLL GSAD
Sbjct: 188 IQSLDFHPHEFLLATGSAD 206
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 631 VTSIDWHPITFLLVAGSAD 687
+ S+D+HP FLL GSAD
Sbjct: 188 IQSLDFHPHEFLLATGSAD 206
>At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; WD-repeat protein, carrot, PIR:T14352
Length = 444
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Frame = +2
Query: 314 NDWKQTNNLVE----HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLR 481
ND + +++VE H V G+ W+ + N+ + D ++W + T L R
Sbjct: 236 NDVRIRSSIVETYLGHTEEVCGLKWSESGNKQASGGNDNVVHIWDRSLASSKQTRQWLHR 295
Query: 482 INRAATCVKGLPW 520
V+ L W
Sbjct: 296 FEEHTAAVRALAW 308
>At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to fizzy-related
protein (GI:5813825) Drosophila melanogaster,
PID:g2326419;
Length = 518
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/63 (22%), Positives = 26/63 (41%)
Frame = +2
Query: 332 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKG 511
+ L H V G+ W+ + + + D +VW Q +T +L+ + VK
Sbjct: 329 SKLAGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ------HSTQPVLKYSEHTAAVKA 382
Query: 512 LPW 520
+ W
Sbjct: 383 IAW 385
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +2
Query: 347 HDLRVMGIDWAPN-TNRIVTCSVDRNAYVW 433
HD V +DW+P+ ++ T S D +W
Sbjct: 380 HDFEVTAVDWSPSEIGKVATASDDFTVRLW 409
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 335 NLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 433
+L H L VM ID + + IVT S D+N +W
Sbjct: 577 SLYGHKLPVMCIDISSDGELIVTGSQDKNLKIW 609
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +2
Query: 314 NDWKQTNNLVEHDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQG 442
N W T H VM + + P +TN + S+DR +W G
Sbjct: 130 NGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLG 173
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +2
Query: 314 NDWKQTNNLVEHDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQG 442
N W T H VM + + P +TN + S+DR +W G
Sbjct: 130 NGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLG 173
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +2
Query: 314 NDWKQTNNLVEHDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQG 442
N W T H VM + + P +TN + S+DR +W G
Sbjct: 130 NGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLG 173
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,585,937
Number of Sequences: 28952
Number of extensions: 337136
Number of successful extensions: 1001
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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