Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0327
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    27   3.3  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    27   3.3  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    27   3.3  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   4.4  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    26   5.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   7.6  

>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +2

Query: 314 DGRILRTTKTRHPRGFMQGRYLESQRDV--EATDK 412
           DGR++  T T HP+      +LES      E+ DK
Sbjct: 199 DGRLISATITNHPKRLPNAEHLESSTKTKDESQDK 233


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 198 IADNPL--RLITDAPVRIYPTTRHRPAAPVVANQ 103
           + +NP   ++I D    IYP+T   P +PV  N+
Sbjct: 204 VEENPFLKKIIYDIHHNIYPSTSPNPTSPVTLNR 237


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 198 IADNPL--RLITDAPVRIYPTTRHRPAAPVVANQ 103
           + +NP   ++I D    IYP+T   P +PV  N+
Sbjct: 204 VEENPFLKKIIYDIHHNIYPSTSPNPTSPVTLNR 237


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/62 (22%), Positives = 30/62 (48%)
 Frame = -3

Query: 673  HVGWIRRSRRIRQYKFTQPEKAPAANLKTVSHVPLSASNPQIR*DNPGQSPRLTVANHIF 494
            H   +++ + I    F +P+K P   +++   +  +  NP +  D+  ++  LT A  +F
Sbjct: 1180 HDSEMKKIKGIALMNFYKPKKVPIHVVQSFCRLLTTWMNPNLMHDSNKKNSSLTDAERLF 1239

Query: 493  AK 488
             K
Sbjct: 1240 VK 1241


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 676 PHVGWIRRSRRIRQYKFTQPEKAPAANLKTVSHVPLS 566
           P V W+  S ++  Y FTQ + + A NL  +  V L+
Sbjct: 61  PVVFWVDGSEKLHAYSFTQRKISLAKNLIPLFSVDLN 97


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 81  TIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAA 185
           T + +T   +  P  P+  A+WD+F++ +   T +
Sbjct: 443 TRKTSTPVSNNRPTTPEQQAVWDVFQRIYTRFTGS 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,067,635
Number of Sequences: 5004
Number of extensions: 65712
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)