Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0327
(678 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0969 - 9765114-9765664,9767963-9768512,9769507-9769561,976... 45 6e-05
09_04_0736 - 19815427-19815642,19815782-19816903,19817006-198177... 33 0.16
06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089 29 2.6
06_01_0982 + 7627420-7628141,7628190-7628643,7629167-7629823,762... 29 2.6
10_01_0260 - 2726204-2727370 29 3.4
03_06_0545 - 34643303-34643416,34643442-34643656,34643968-34644070 29 4.5
01_05_0382 - 21661973-21662124,21662367-21662659,21662994-216631... 29 4.5
10_05_0071 - 8801918-8802235,8802335-8802488,8802701-8802938,880... 28 7.9
06_01_0997 - 7752634-7753128,7753280-7753708,7754403-7755196,775... 28 7.9
>12_01_0969 -
9765114-9765664,9767963-9768512,9769507-9769561,
9769918-9769980,9770547-9771325
Length = 665
Score = 44.8 bits (101), Expect = 6e-05
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = +3
Query: 123 LPDDDALWDIFEQGHQLLTAAGYQQYETSAYAKPGYQCQHNLNY 254
LP++ + ++ + L+ AGY YE S+Y K GY+C+HN+ Y
Sbjct: 317 LPNEKDSANFYKIASKRLSEAGYNHYEISSYCKTGYECKHNVTY 360
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 30 LRQAIELNPPHLSWYQLTIEPNTLFG 107
LR ++ P H+S Y L IE T FG
Sbjct: 233 LRCTVDARPTHVSVYDLQIEQGTKFG 258
>09_04_0736 -
19815427-19815642,19815782-19816903,19817006-19817707,
19817808-19817855,19817959-19818201,19819035-19819391
Length = 895
Score = 33.5 bits (73), Expect = 0.16
Identities = 30/90 (33%), Positives = 38/90 (42%)
Frame = +3
Query: 24 GDLRQAIELNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQYE 203
G+L A E +P S Y + N PP LP A+ + GH L T QQY+
Sbjct: 744 GNLAGAQE-HPTQHSAYNPEMTLNLPPPPPPPTLPPSSAILSS-QVGHSLPTQMSQQQYQ 801
Query: 204 TSAYAKPGYQCQHNLNYGALVTTSVLAAAH 293
Y Y Q N A V++S L A H
Sbjct: 802 PEQY----YMTQSNYGQLATVSSSNLQAHH 827
>06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089
Length = 681
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 261 LVTTSVLAAAHTAK*PSRMGAFCVPPKRVIRVVLC 365
L+ + +AAA A+ PSR+ PP RV+ LC
Sbjct: 5 LLLPATVAAAAAARLPSRLAVGAAPPFRVLPFFLC 39
>06_01_0982 +
7627420-7628141,7628190-7628643,7629167-7629823,
7629975-7630469
Length = 775
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = -3
Query: 640 RQYKFTQPEKAPAANLKTVSHVPLSASNPQIR*DNPGQSPRLTVANHIFAKPGIR---NK 470
++ K QP APA + +S +P +++NP ++ ++P + KPG+ +K
Sbjct: 706 KKQKKAQP--APADPARGISDIPSASTNPTLQINDPPIIQKQGRPVSTRRKPGVHAKASK 763
Query: 469 LHARRGLQQTE 437
R+GL TE
Sbjct: 764 TSVRKGLASTE 774
>10_01_0260 - 2726204-2727370
Length = 388
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 350 DDAFWWYAECAHPGRSLCRVR 288
DD WW +C H GR+L R R
Sbjct: 103 DDGMWWCVDCRH-GRALLRSR 122
>03_06_0545 - 34643303-34643416,34643442-34643656,34643968-34644070
Length = 143
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -2
Query: 335 WYAECAHPGRSLCRVRRSQYRCSHQSAVVEIVLALITGF 219
W+ C GR V R C H A+ + LA+ITGF
Sbjct: 39 WWCPCITFGRVAEIVDRGSTSCGHSGALY-VFLAVITGF 76
>01_05_0382 -
21661973-21662124,21662367-21662659,21662994-21663178,
21663268-21664023,21664118-21664390
Length = 552
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Frame = +2
Query: 236 PAQSQLRRFGDYIGIGCGA-----HGKVTFP--DGRILRTTKTRHPRGFMQGRYLESQRD 394
PA+S L RFGD +G+ GA P DGR++ T+T + LE+
Sbjct: 165 PAKSLLHRFGDLVGLVTGAALTDNPNSAVLPLGDGRVMCLTETTKSSVLIDPDTLETVGR 224
Query: 395 VEATDK 412
TD+
Sbjct: 225 FRYTDR 230
>10_05_0071 -
8801918-8802235,8802335-8802488,8802701-8802938,
8803109-8803319,8803391-8803515,8808503-8808622,
8808728-8809586
Length = 674
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 507 ATVRRGDCPGLSHRICGLLADNGTWETVFKFAAGAFS 617
ATV G L R+ G LAD + + ++AAG +
Sbjct: 154 ATVNAGHFDALVTRLAGALADWAAYNSTLRYAAGVMA 190
>06_01_0997 -
7752634-7753128,7753280-7753708,7754403-7755196,
7755247-7755574
Length = 681
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = -3
Query: 640 RQYKFTQPEKAPAANLKTVSHVPLSASNPQIR*DNPGQSPRLTVANHIFAKPGIR---NK 470
++ K QP APA + VS +P +++NP ++ ++P + KPG+ +K
Sbjct: 612 KKQKKAQP--APADPARGVSDIPSASTNPTLQINDPPIIQKQGRPVSTRRKPGVHAKASK 669
Query: 469 LHARRGLQQT 440
R+GL T
Sbjct: 670 TSVRKGLAST 679
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,765,218
Number of Sequences: 37544
Number of extensions: 507714
Number of successful extensions: 1457
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1457
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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