Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0327
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38640| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_56796| Best HMM Match : CITED (HMM E-Value=1.2)                     28   6.0  
SB_25419| Best HMM Match : PH (HMM E-Value=2.8e-16)                    28   6.0  
SB_3174| Best HMM Match : E_raikovi_mat (HMM E-Value=1.4)              28   6.0  
SB_30324| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30)                 28   8.0  
SB_38076| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05)                 28   8.0  
SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  

>SB_38640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 102

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -1

Query: 237 GTDNRVWRKRKFHIADNPLRLITDAPVRIYPTTRHRPAAPVVANQTAYW 91
           GT  RVW +    I     R+++D  V+   TT+HR A  VV N  + W
Sbjct: 39  GTSVRVWLRTGHFITP---RVVSDQQVK---TTKHRTATCVVTNGVSIW 81


>SB_56796| Best HMM Match : CITED (HMM E-Value=1.2)
          Length = 431

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/81 (23%), Positives = 30/81 (37%)
 Frame = -3

Query: 670 VGWIRRSRRIRQYKFTQPEKAPAANLKTVSHVPLSASNPQIR*DNPGQSPRLTVANHIFA 491
           +G   R R +       P   P A      H       P  R   PG++PR  +    FA
Sbjct: 145 IGLYTRRRELAAAFTRTPAGGPGAERAADPHSAADGGAPPTR-PPPGRAPRSALRRQRFA 203

Query: 490 KPGIRNKLHARRGLQQTEAIH 428
            PG+     +++  +   A+H
Sbjct: 204 LPGLGCYPWSKQTFRHESALH 224


>SB_25419| Best HMM Match : PH (HMM E-Value=2.8e-16)
          Length = 453

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/90 (23%), Positives = 35/90 (38%)
 Frame = +1

Query: 280 WLRRTRQSDLPGWAHSAYHQNASSAWFYARKVSGKPA*CRSHR*AV*VLYESLPSAGGRA 459
           WL RTR+ ++    H    Q+         K   K    R+    +    +S P      
Sbjct: 264 WLERTRRQEMERALHEKQKQDELDRLAAEEKSRKKAMTDRAIHDRLPQQVKSPPKDDMNL 323

Query: 460 ARGVYCVYRALRRCDSPQLDEAIAQGYLTE 549
           A+ +  V   L  C S ++   + +GYLT+
Sbjct: 324 AQHIVSVGHILENCPSVKVTPTLCKGYLTK 353


>SB_3174| Best HMM Match : E_raikovi_mat (HMM E-Value=1.4)
          Length = 272

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 430 ESLPSAGGRAARGVYCVYRALRRCD 504
           E  PS GGR +RG   +Y   RR D
Sbjct: 245 EQFPSPGGRYSRGTRTIYEQCRRHD 269


>SB_30324| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 224 RLSVPAQSQLRRFGDYIGIGCGAHGKVTFPDGRILRTTKTRHPRGFMQGRY 376
           R+++PA ++LRR   +  +    H +VT   GR    T   +P G    RY
Sbjct: 190 RIAIPALAELRRLTGFNQLRYYCHKRVT---GRTFHVTTALNPAGLEVVRY 237


>SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30)
          Length = 1191

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
 Frame = -1

Query: 234  TDNRVWRKRKFHIADNPLRLITDAPVRIYPTTRHRPAAPVVANQTAYW--VRWSVD---- 73
            +D R+   R     D+ L+++       +P T+ +   PV      YW  +R+  D    
Sbjct: 884  SDKRLEEIRSELKRDDALKVVMHYVQNGWPETKQKLYGPV----KKYWDILRYLHDGHQG 939

Query: 72   ---TRKDAADSVQWPGVDRQ 22
               TR +AA SV WPG+ +Q
Sbjct: 940  ISKTRDNAASSVWWPGISKQ 959


>SB_38076| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05)
          Length = 577

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -3

Query: 499 IFAKPGIRNKLHARRGLQQTEAIHKEL-KRLICGFDITLAFQIPSL 365
           IF K  ++N+ H R+ L QT+   + + K L+    I+L   +P++
Sbjct: 177 IFVKFKLQNRQHGRQALPQTQQRERNMAKTLVTATSISLLCCVPTV 222


>SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 323 CAHPGRSLCRVRRSQYRCSHQSAVVEIVL 237
           C HP  ++  + RS Y C H +  + ++L
Sbjct: 638 CEHPAIAITLLLRSPYHCEHPAIAITLLL 666


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,147,653
Number of Sequences: 59808
Number of extensions: 551029
Number of successful extensions: 1354
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1354
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)