Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0327
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.88 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.5  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   6.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   6.2  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            21   8.2  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 264 VTTSVLAAAHTAK*PSRMGAFCVPPK 341
           +  SV+AAA T   P+ +  +C+PP+
Sbjct: 467 MAASVVAAALTGTYPTLLPQWCLPPR 492


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 388  LAFQIPSLHKTTRMTRFGGTQNAPIREGHFAVCAA 284
            +A Q+P+     R+T FGG    P R      C A
Sbjct: 1303 VAAQVPTNRVPARITSFGGHVVRPWRGSATLACNA 1337


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 388  LAFQIPSLHKTTRMTRFGGTQNAPIREGHFAVCAA 284
            +A Q+P+     R+T FGG    P R      C A
Sbjct: 1299 VAAQVPTNRVPARITSFGGHVVRPWRGSATLACNA 1333


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 400 FDITLAFQIPSLHKTTRMTRFGG 332
           FDI +AF++P L  ++ M R  G
Sbjct: 102 FDIIMAFEMPMLVISSFMERMIG 124


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -1

Query: 501 TSSQSPVYAINSTRGAASSRRKRFIKNSNGLSV 403
           TS     Y      GA   ++KR +  + GLS+
Sbjct: 75  TSENEENYPHYQMSGAKQKKKKRSLMGAQGLSI 107


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 400 FDITLAFQIPSLHKTTRMTRFGG 332
           FDI +AF++P L  ++ M R  G
Sbjct: 102 FDIIMAFEMPMLVISSFMERMIG 124


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = -3

Query: 676 PHVGWIRRSRRIRQYKFTQPEKAPAAN 596
           P + W++    +  +KF Q  + P  N
Sbjct: 52  PEITWLKDGIELYHHKFFQVHEWPVGN 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,461
Number of Sequences: 438
Number of extensions: 4526
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)