Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0327
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63290.1 68418.m07943 coproporphyrinogen oxidase-related low ...    64   6e-11
At1g72270.1 68414.m08355 expressed protein                             31   0.53 
At5g39820.1 68418.m04823 no apical meristem (NAM) family protein...    30   1.6  
At1g80520.1 68414.m09437 expressed protein                             28   4.9  
At2g17820.1 68415.m02064 histidine kinase 1 99% identical to GP:...    28   6.5  

>At5g63290.1 68418.m07943 coproporphyrinogen oxidase-related low
           similarity to coproporphyrinogen III oxidase from
           Geobacillus stearothermophilus [GI:2104798]; contains
           Pfam profile PF04055: radical SAM domain protein
          Length = 484

 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
 Frame = +3

Query: 3   QSLEEALGDLRQAIELNPPHLSWYQLTIEPNTLFGSR----PPVLPDDDALWDIFEQGHQ 170
           Q+LE     LR AIE  P H+S Y L +E  T FG+        LP +    + ++    
Sbjct: 239 QTLEMWEESLRLAIESQPNHVSVYDLQVEQGTKFGNLYTPGQSPLPSETQSAEFYKTASS 298

Query: 171 LLTAAGYQQYETSAYAKPGYQCQHNLNY 254
           +L  AGY+ YE S+Y++ G++C+HNL Y
Sbjct: 299 MLRGAGYEHYEVSSYSRDGFKCKHNLIY 326


>At1g72270.1 68414.m08355 expressed protein
          Length = 2777

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +1

Query: 205 LPLTPNPVISASTISTTALW*LHRYWLRRTRQSDLPGWAHSAYHQNASSAWF 360
           LP++P+P  S+S I+TT  W  +R+    T   D P W    Y + + S +F
Sbjct: 62  LPISPSPSSSSSAITTTT-W-FNRFLTSATEDEDDPRWC--LYFRMSKSTFF 109


>At5g39820.1 68418.m04823 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           NAC domain protein NAM, Arabidopsis thaliana,
           gb:AAD17313
          Length = 334

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -1

Query: 570 YLPVIRKFGEITLGNRLV*--LWRITSSQSPVYAINSTR 460
           Y P  RK+   T  NR+     W+ T +  P+Y+++STR
Sbjct: 76  YCPRDRKYRNSTRPNRVTGGGFWKATGTDRPIYSLDSTR 114


>At1g80520.1 68414.m09437 expressed protein
          Length = 192

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
 Frame = -1

Query: 579 MFRYLPVIRKFGEITLGNRLV*LWRITSSQSPVYAINSTRGAA-----SSRRKRFIKNSN 415
           +FR L  I+K G+    +    + R  SS++ V    ST  +      S+R+KR +  SN
Sbjct: 74  IFRVLIAIKKTGKCFSEHVRAWIRREESSRALVVVSRSTSSSGNGRWKSARKKRLVMPSN 133

Query: 414 GLSVASTSRWLSRYLPC 364
           G  V      L+   PC
Sbjct: 134 GNGVKEERLLLTNGTPC 150


>At2g17820.1 68415.m02064 histidine kinase 1 99% identical to
           GP:4586626
          Length = 1207

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 268 LHRYWLRRTRQSDLPGWAHSAYHQNASSAWF 360
           L  Y +  T   D+ GW + + H N S+ W+
Sbjct: 216 LKNYSISGTGPEDVSGWNNKSIHGNMSAIWY 246


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,566,146
Number of Sequences: 28952
Number of extensions: 367528
Number of successful extensions: 1052
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)