Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0324
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    27   3.2  
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    26   4.3  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   7.5  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    25   9.9  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.9  
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    25   9.9  

>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -3

Query: 189 PACTTSTPEKTPSIPSGS*GTTVRYNSLKV--PPRYRCAGPSSVLSMYPAI 43
           P+ T STP    S+P  S  T+V   SLK     +YR     S+L  +PA+
Sbjct: 417 PSSTPSTPSPAESLPQPSNPTSVYAKSLKEFWLDKYRL----SILQKWPAV 463


>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +3

Query: 249 DIWSIMFGVGGGALCMFSKNGGPVPINKNLWSVSYCLVTSSMAFFIQAVLYFIVD 413
           D     FGV G  L  FS N GPV      W V Y  +   +  F+  V++ +V+
Sbjct: 241 DYLGAFFGVSGLVLINFSWNQGPVV----GWQVPYVYILLIIG-FLSLVVFVLVE 290


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1261

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +1

Query: 490  C*SVTSLALVPRGAD-ARSITGNTRRRHVDMVSGRRFLAQEENLHNVVNKMFV 645
            C ++  L  +PR +  A  I  +TRR   D  +    + +E   HNV   +F+
Sbjct: 876  CDNMKMLGYIPRASTFAHLINNSTRRGDTDDATTALNIFEETKRHNVKPSVFL 928


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 51  DTSIERYWAPRICTEVEPSRSYTAPSC 131
           +T+I   WA   CTE+  S+    P+C
Sbjct: 397 NTNIWWVWAESRCTEIPESKRTVFPNC 423


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +3

Query: 333 NLWSVSYCLVTSSMAFFIQAVLYFIVDLKNKWGGRPLYYAGQNALFLYVGS 485
           NL S+   L +    ++   + Y+  D+  KW    + Y   NAL  Y  S
Sbjct: 459 NLDSLKSILCSRVRLYYNIEIAYYFTDVLLKWFQPIIRYEFDNALIFYKAS 509


>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -2

Query: 439 GLPPH-LFFRSTMKYSTACMKNAIDDVTRQ*DTDHRF 332
           GLP H LF   + +Y T CM    D   RQ   D  F
Sbjct: 550 GLPLHTLFCIESDRYGTTCMAYRYDAANRQFIKDPMF 586


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,020,122
Number of Sequences: 5004
Number of extensions: 66199
Number of successful extensions: 198
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)