Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0324
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23067| Best HMM Match : No HMM Matches (HMM E-Value=.)              73   3e-13
SB_18029| Best HMM Match : LIM (HMM E-Value=0.44)                      31   1.1  
SB_18870| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_27185| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_52727| Best HMM Match : Plasmodium_HRP (HMM E-Value=2)              29   2.6  
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_3785| Best HMM Match : RuvA_N (HMM E-Value=1.6)                     29   3.4  
SB_24563| Best HMM Match : Mad3_like (HMM E-Value=0.71)                29   4.5  
SB_20006| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_26982| Best HMM Match : 7tm_1 (HMM E-Value=9.94922e-44)             29   4.5  
SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_4500| Best HMM Match : A1_Propeptide (HMM E-Value=9.4)              28   7.9  

>SB_23067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 30/60 (50%), Positives = 43/60 (71%)
 Frame = +2

Query: 14  NHSLKNCTGGIAGYIDRTLLGPAHLYRGGTFKELYRTVVPHDPEGILGVFSGVLVVQAGL 193
           N S  NCTGG+A ++D  LLG  H+Y+ GTFK++YRT V HDPEG++G  + + +V  G+
Sbjct: 209 NSSAFNCTGGMASHVDSWLLGK-HVYQRGTFKDMYRTTVAHDPEGVMGTLTSIFIVFLGV 267



 Score = 31.9 bits (69), Expect = 0.49
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 384 IQAVLYFIVDLKNKWGGRPL-YYAGQNALFLYVGSELLKRHFP 509
           +Q V+  +++    + G P  +Y G N++ +Y G E L +HFP
Sbjct: 306 VQVVIPTVLEDPAYFAGAPKGHYRGMNSILVYCGHEWLGKHFP 348


>SB_18029| Best HMM Match : LIM (HMM E-Value=0.44)
          Length = 885

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 96  PRYRCAGPSSVLSMYPAIPPVQFLSEWLP 10
           PR  CAG +     YP IP  + + EW P
Sbjct: 549 PRLACAGRAQTYHHYPCIPAEKPIEEWRP 577


>SB_18870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 443 VLRWSKCSIPLRRLRAVEASLPLHWYLEAPTH 538
           +LR+S+  +PL  L+  E S  +H +   PTH
Sbjct: 743 ILRFSRPKLPLLFLKVAELSAEIHEFFSKPTH 774


>SB_27185| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 448

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 11/79 (13%)
 Frame = +2

Query: 377 VLH-TGRA--VLHRRSEEQVGRQTSVLRWS-KCSIPLRRLRAV---EASLPLHWY-LEAP 532
           VLH TG     L R S+  +G+  SVL W+   S  L R       +A   LHW    +P
Sbjct: 288 VLHWTGTVGTTLDRHSQSYIGQAQSVLHWTCTVSTTLDRYSQYYIGQAQSVLHWTGTVSP 347

Query: 533 T---HAQLLATHAGAMLIW 580
           T   H+Q    HA ++L W
Sbjct: 348 TLDMHSQYYIGHAQSVLHW 366


>SB_52727| Best HMM Match : Plasmodium_HRP (HMM E-Value=2)
          Length = 332

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -1

Query: 440 RSAAPLVLQ--IDDEVQHGLYEERHR*RHETVGHRPQVLVDGHRAAVLREHAEGATA 276
           +S   +VLQ    +E Q+ L+  RH  R   V H      +G      + H+EG TA
Sbjct: 99  QSEGQIVLQRRSHNEAQNALHHTRHSERQPAVHHTRNSQGEGQNILQRKSHSEGQTA 155


>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 58  R*NATGPRASVPRWNLQGVI-PHRRASRP*GYTGRLLRSAGGAGWPHATR 204
           R N+ GP  + PR   +     H RAS P G  G +   +G  G PH  R
Sbjct: 687 RANSPGPSINSPRGRAESPSNAHGRASSPSGTRGPVSGPSGARGSPHQPR 736


>SB_3785| Best HMM Match : RuvA_N (HMM E-Value=1.6)
          Length = 191

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 316 GPPFLENMQRAPPPTPNIIDQISSALSLL 230
           G   L    R PPP P++ D I   L+LL
Sbjct: 110 GSKLLNTAMRVPPPVPHLKDYIEGVLALL 138


>SB_24563| Best HMM Match : Mad3_like (HMM E-Value=0.71)
          Length = 235

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = -1

Query: 566 RRRVLPVIERASAPRGTSAREVTLQQL*A--DVKE*SILTSVIQRSAAPLVLQIDDEVQH 393
           R + L  I+R +  R    RE  L ++    D+ +   LT+V      P+V Q+ D  +H
Sbjct: 92  RFKRLREIQREARARQNDRRENKLPKVNGKLDINK-EKLTNVCASDRLPVVKQVFDSGKH 150

Query: 392 GLYEERHR 369
            L E+RH+
Sbjct: 151 NLSEKRHK 158


>SB_20006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +1

Query: 436 DLCITLVKMLYSFTSAQSC*SVTSLALVPRGADARSITGNTRRRHVDMVSGRRFLAQEEN 615
           D+C T +        AQ+  +V+SLA       A S+ G TR R   +V+      ++EN
Sbjct: 86  DICCTALASQVWLIRAQAAQTVSSLAAKLGKLSASSVVGTTRHRGSRVVNSVLKECRKEN 145

Query: 616 L 618
           L
Sbjct: 146 L 146


>SB_26982| Best HMM Match : 7tm_1 (HMM E-Value=9.94922e-44)
          Length = 382

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = +2

Query: 11  GNHSLKN--CTGGIAGYIDRTLL 73
           GN + +N  C GG+ GY+DR+LL
Sbjct: 342 GNDTKRNMVCIGGLRGYLDRSLL 364


>SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 23/67 (34%), Positives = 30/67 (44%)
 Frame = -3

Query: 531 GASRYQCKGSDASTALSRRKGIEHFDQRNTEVCRPTCSSDRR*STARPV*RTPSMTSRDS 352
           G+   +   S +S  LSRR+G+         +  P  SS R   T R   RTP   S   
Sbjct: 418 GSQAERTTSSGSSDKLSRRRGL-----LTLTLAVPRSSSQR---TPRSAQRTPRSGSSAQ 469

Query: 351 RTPTTGS 331
           RTP +GS
Sbjct: 470 RTPRSGS 476


>SB_4500| Best HMM Match : A1_Propeptide (HMM E-Value=9.4)
          Length = 119

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -2

Query: 442 RGLPPHLFFRSTMKYSTACMKNAIDD 365
           RGL  H FF STMK S   +KN +D+
Sbjct: 30  RGL--HEFFNSTMKRSYVAIKNELDE 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,323,387
Number of Sequences: 59808
Number of extensions: 574967
Number of successful extensions: 1672
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1661
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)