Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0324
(668 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK057293-1|BAB71412.1| 367|Homo sapiens protein ( Homo sapiens ... 93 8e-19
Z93783-1|CAI20354.1| 1759|Homo sapiens protein ( Human DNA seque... 32 2.1
BC030146-1|AAH30146.1| 717|Homo sapiens RNA binding motif prote... 32 2.1
BC028626-1|AAH28626.1| 1029|Homo sapiens TNRC6B protein protein. 32 2.1
AL031589-2|CAI18813.1| 1759|Homo sapiens protein ( Human DNA seq... 32 2.1
AL022238-1|CAI18982.1| 1759|Homo sapiens protein ( Human DNA seq... 32 2.1
AK025571-1|BAB15173.1| 727|Homo sapiens osaminidase mRNA. prot... 32 2.1
AB029016-1|BAA83045.2| 1727|Homo sapiens KIAA1093 protein protein. 32 2.1
AK127619-1|BAC87060.1| 237|Homo sapiens protein ( Homo sapiens ... 30 8.6
>AK057293-1|BAB71412.1| 367|Homo sapiens protein ( Homo sapiens
cDNA FLJ32731 fis, clone TESTI2001134. ).
Length = 367
Score = 93.1 bits (221), Expect = 8e-19
Identities = 40/85 (47%), Positives = 55/85 (64%)
Frame = +3
Query: 255 WSIMFGVGGGALCMFSKNGGPVPINKNLWSVSYCLVTSSMAFFIQAVLYFIVDLKNKWGG 434
W + G+ AL S+N G +P+NKNLWS+SY SS AFFI VLY +VD+K W G
Sbjct: 242 WCCILGLISVALTKVSENEGFIPVNKNLWSLSYVTTLSSFAFFILLVLYPVVDVKGLWTG 301
Query: 435 RPLYYAGQNALFLYVGSELLKRHFP 509
P +Y G N++ +YVG E+ + +FP
Sbjct: 302 TPFFYPGMNSILVYVGHEVFENYFP 326
Score = 64.9 bits (151), Expect = 2e-10
Identities = 29/55 (52%), Positives = 37/55 (67%)
Frame = +2
Query: 29 NCTGGIAGYIDRTLLGPAHLYRGGTFKELYRTVVPHDPEGILGVFSGVLVVQAGL 193
NCTGG AGYIDR LLG HLY+ + LY T V +DPEGILG + +++ G+
Sbjct: 165 NCTGGAAGYIDRLLLGDDHLYQHPSSAVLYHTEVAYDPEGILGTINSIVMAFLGV 219
>Z93783-1|CAI20354.1| 1759|Homo sapiens protein ( Human DNA sequence
from clone RP3-377F16 on chromosome 22. ).
Length = 1759
Score = 31.9 bits (69), Expect = 2.1
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 162 KTPSIPSGS*GTTVRYNSLKVPPRYRCAGPSSVLSMYPAIPP 37
K ++P+G + RY +VPPR+RC VL PP
Sbjct: 107 KRVAVPNGQPPSAARYMPREVPPRFRCQQDHKVLLKRGQPPP 148
>BC030146-1|AAH30146.1| 717|Homo sapiens RNA binding motif protein
35B protein.
Length = 717
Score = 31.9 bits (69), Expect = 2.1
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Frame = +2
Query: 2 RPPGNHSLKNCTGGIAG--YIDRT----LLGPAHLYRGGTFKELYRTVVPHDPEGILGVF 163
RP G H + N G +G +I T L A KE Y VVP E + V
Sbjct: 493 RPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVL 552
Query: 164 SGVLVVQAGLTPPGSCLPTTTP 229
G + ++G++PP LP +P
Sbjct: 553 MGGTLGRSGMSPPPCKLPCLSP 574
>BC028626-1|AAH28626.1| 1029|Homo sapiens TNRC6B protein protein.
Length = 1029
Score = 31.9 bits (69), Expect = 2.1
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 162 KTPSIPSGS*GTTVRYNSLKVPPRYRCAGPSSVLSMYPAIPP 37
K ++P+G + RY +VPPR+RC VL PP
Sbjct: 107 KRVAVPNGQPPSAARYMPREVPPRFRCQQDHKVLLKRGQPPP 148
>AL031589-2|CAI18813.1| 1759|Homo sapiens protein ( Human DNA
sequence from clone RP6-11O7 on chromosome 22q13.1-13.2.
).
Length = 1759
Score = 31.9 bits (69), Expect = 2.1
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 162 KTPSIPSGS*GTTVRYNSLKVPPRYRCAGPSSVLSMYPAIPP 37
K ++P+G + RY +VPPR+RC VL PP
Sbjct: 107 KRVAVPNGQPPSAARYMPREVPPRFRCQQDHKVLLKRGQPPP 148
>AL022238-1|CAI18982.1| 1759|Homo sapiens protein ( Human DNA
sequence from clone RP5-1042K10 on chromosome
22q13.1-13.2. ).
Length = 1759
Score = 31.9 bits (69), Expect = 2.1
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 162 KTPSIPSGS*GTTVRYNSLKVPPRYRCAGPSSVLSMYPAIPP 37
K ++P+G + RY +VPPR+RC VL PP
Sbjct: 107 KRVAVPNGQPPSAARYMPREVPPRFRCQQDHKVLLKRGQPPP 148
>AK025571-1|BAB15173.1| 727|Homo sapiens osaminidase mRNA.
protein.
Length = 727
Score = 31.9 bits (69), Expect = 2.1
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Frame = +2
Query: 2 RPPGNHSLKNCTGGIAG--YIDRT----LLGPAHLYRGGTFKELYRTVVPHDPEGILGVF 163
RP G H + N G +G +I T L A KE Y VVP E + V
Sbjct: 503 RPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVL 562
Query: 164 SGVLVVQAGLTPPGSCLPTTTP 229
G + ++G++PP LP +P
Sbjct: 563 MGGTLGRSGMSPPPCKLPCLSP 584
>AB029016-1|BAA83045.2| 1727|Homo sapiens KIAA1093 protein protein.
Length = 1727
Score = 31.9 bits (69), Expect = 2.1
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 162 KTPSIPSGS*GTTVRYNSLKVPPRYRCAGPSSVLSMYPAIPP 37
K ++P+G + RY +VPPR+RC VL PP
Sbjct: 76 KRVAVPNGQPPSAARYMPREVPPRFRCQQDHKVLLKRGQPPP 117
>AK127619-1|BAC87060.1| 237|Homo sapiens protein ( Homo sapiens
cDNA FLJ45717 fis, clone FELNG2001613. ).
Length = 237
Score = 29.9 bits (64), Expect = 8.6
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -1
Query: 605 CARKRRPLTISTWRRRVLPVIERASAPRGTSA 510
C R P T +TWRRR+LP A P G +A
Sbjct: 201 CGSGRTPPTSATWRRRLLP----AEVPPGAAA 228
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,266,717
Number of Sequences: 237096
Number of extensions: 3004209
Number of successful extensions: 6867
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6857
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -