Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0324
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   2.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   2.6  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   3.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   3.5  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    22   4.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   6.1  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    22   6.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.1  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   8.0  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = -2

Query: 661 IYLLLEQTFYLQRYEDSLPVQENADR*PYQHGAGVC 554
           I  LL  T +L    +SLP  E        +G  +C
Sbjct: 249 ISALLSMTVFLMTIRESLPPTEKTPLISLYYGVSIC 284


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 356 TVGHRPQVLVDGHRAAVLREHAEGATADTEHYRPN 252
           TVG RP+ +V  ++ AV R+  +   A  E  +PN
Sbjct: 249 TVGMRPECVVPEYQCAVKRKEEK---AQKEKDKPN 280


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 356 SRDVIDGVLHTGRAVLHRRSEEQVG 430
           S DV DG++      +HR S +Q G
Sbjct: 283 SIDVKDGIVLATGITVHRNSAQQAG 307


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 356 SRDVIDGVLHTGRAVLHRRSEEQVG 430
           S DV DG++      +HR S +Q G
Sbjct: 283 SIDVKDGIVLATGITVHRNSAQQAG 307


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 96  PRYRCAGPSSVLSMYPAIPP 37
           PR+RC GP +    +  IPP
Sbjct: 146 PRFRCIGPPTPFPRF--IPP 163


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 307 FLENMQRAPPPTPNIIDQISSALS 236
           FL  ++  P P PN    I+S++S
Sbjct: 580 FLPKLKGIPDPXPNTCKVIASSVS 603


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 356 TVGHRPQVLVDGHRAAVLRE 297
           TVG RP+ +V  ++ AV R+
Sbjct: 46  TVGMRPECMVPEYQCAVKRK 65


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 474 KGIEHFDQRNTEVCRPTCSSDRR 406
           KG+E  D R  EV R   S D+R
Sbjct: 775 KGMETQDYRIPEVMRRLMSEDKR 797



 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -3

Query: 195  VRPACTTSTPEKTPSIPSGS*GTTVRYNSLKVP 97
            +RP    + P+  P  P  S G     N +K+P
Sbjct: 1115 IRPGTADNKPQLKPQKPFTSPGGIPGPNGIKMP 1147


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +3

Query: 411 DLKNKWGGRPLYYAGQNALFLYVGS 485
           D++N+    P+Y   + + F Y+G+
Sbjct: 287 DMRNRGNNFPVYQVEKRSPFRYLGA 311


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,572
Number of Sequences: 438
Number of extensions: 5077
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)