Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0324
         (668 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27730.1 68418.m03326 expressed protein                             44   9e-05
At3g17030.1 68416.m02174 expressed protein                             31   0.92 

>At5g27730.1 68418.m03326 expressed protein
          Length = 472

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
 Frame = +3

Query: 318 VPINKNLWSVSYCLVTSSMAFFIQAVLYFIVD-LKNKWGGRPLYYAGQNALFLYV-GSE 488
           +P+NK L+S SY  VTS  A  + + LY +VD L+ K    PL + G NA+ +YV G+E
Sbjct: 347 MPLNKQLYSFSYICVTSGAAALVFSSLYSLVDILEWKHMFLPLKWIGMNAMLVYVMGAE 405



 Score = 23.8 bits (49), Expect(2) = 9.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 50  GYIDRTLLGPAHLY 91
           GY+DR +LG  H+Y
Sbjct: 243 GYVDRQVLGINHMY 256



 Score = 21.8 bits (44), Expect(2) = 9.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 131 PHDPEGILGVFSGVLVVQAGL 193
           P +PEGIL   S +L    G+
Sbjct: 288 PFEPEGILSSISAILSTIIGV 308


>At3g17030.1 68416.m02174 expressed protein
          Length = 648

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 603 CKKTPTANHINMAPACVASN*ACVGASRYQCKGS 502
           C +  +A H+ + P+ +     CV  S++QC+GS
Sbjct: 337 CLEYGSATHLYLVPSTLQEERVCVALSQHQCQGS 370


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,426,358
Number of Sequences: 28952
Number of extensions: 381600
Number of successful extensions: 1039
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)