Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0323
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34622| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   8e-09
SB_7528| Best HMM Match : Aldo_ket_red (HMM E-Value=0)                 49   4e-06
SB_33699| Best HMM Match : Aldo_ket_red (HMM E-Value=3.1)              43   3e-04
SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.)               43   3e-04
SB_54717| Best HMM Match : Aldo_ket_red (HMM E-Value=0)                39   0.004
SB_56309| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.12 
SB_2224| Best HMM Match : Extensin_2 (HMM E-Value=0.16)                29   2.5  
SB_21254| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_15292| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_23344| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_14976| Best HMM Match : rve (HMM E-Value=1.3e-38)                   29   4.4  
SB_30758| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_52108| Best HMM Match : DUF1053 (HMM E-Value=6)                     28   7.7  

>SB_34622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 30/70 (42%), Positives = 40/70 (57%)
 Frame = +3

Query: 291 VATLKLRDGTFMPVIALGTALLPPRLATEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKN 470
           +AT+KL +G  MPV+ LGT    P      V+ AI  GYR ID AY Y NEK +G A++ 
Sbjct: 1   MATVKLNNGLEMPVLGLGTWKSKPGQVENAVKFAIKEGYRHIDCAYAYRNEKEVGDALRE 60

Query: 471 KIDDGTVRRD 500
            +     R+D
Sbjct: 61  LLGSVVERKD 70



 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 24/55 (43%), Positives = 33/55 (60%)
 Frame = +2

Query: 491 EARRALIMGKLWSTFHRTDLVETACRISLADLGLEFFDLFLIHNPMSFEGRQQFY 655
           E +   I  KLW+T H    V + C  SL DLGL++ DL+LIH P+SF    +F+
Sbjct: 67  ERKDLFITSKLWNTKHNPKDVRSNCVDSLKDLGLDYLDLYLIHWPLSFRDGDEFF 121


>SB_7528| Best HMM Match : Aldo_ket_red (HMM E-Value=0)
          Length = 407

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 22/44 (50%), Positives = 31/44 (70%)
 Frame = +3

Query: 381 VETAIDMGYRAIDTAYIYGNEKLIGKAIKNKIDDGTVRRDELLL 512
           V  AI++GYR ID A IYGNE  IG+A+   + +G V+R+EL +
Sbjct: 71  VRLAIELGYRHIDCAEIYGNEGEIGEALSEVLTEGKVKREELFV 114



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 18/43 (41%), Positives = 28/43 (65%)
 Frame = +2

Query: 509 IMGKLWSTFHRTDLVETACRISLADLGLEFFDLFLIHNPMSFE 637
           +  KLW   H  D V  AC+ +L +L L++ DL+LIH P++F+
Sbjct: 114 VTSKLWCDSHHPDDVLPACQATLKNLQLDYLDLYLIHIPVAFK 156



 Score = 36.3 bits (80), Expect = 0.022
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = +3

Query: 381 VETAIDMGYRAIDTAYIYGNEKLIGKAIKNKIDDGTVRRDE 503
           V  A ++GYR ID A I+GNE   G+A+   +  G V+R+E
Sbjct: 18  VRLAAELGYRLIDCAEIHGNE---GEALSGVLTKGKVKREE 55


>SB_33699| Best HMM Match : Aldo_ket_red (HMM E-Value=3.1)
          Length = 93

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 26/69 (37%), Positives = 37/69 (53%)
 Frame = +3

Query: 306 LRDGTFMPVIALGTALLPPRLATEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKNKIDDG 485
           L DG  +P   LG   L  +   + V  A++ GYR IDTA  Y NEK +G+A++    + 
Sbjct: 3   LSDGYKIPRFGLGLYDLDEKHTKQAVLWALENGYRMIDTAASYNNEKRVGEALR----ES 58

Query: 486 TVRRDELLL 512
            V R E+ L
Sbjct: 59  AVPRSEVYL 67


>SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
 Frame = +3

Query: 294 ATLKLRDGTFMPVIALGTALLPPRLATEIVETAIDMGYRAIDTAYIYG-NEKLIGKAIKN 470
           A + L  G  MPV+  GTA L     + +V+TA++ GYR IDTA  Y  +E  + KAI  
Sbjct: 327 ADVLLASGYTMPVMGFGTATLGEDTLS-VVKTALETGYRLIDTAQGYPLSEPQVAKAI-- 383

Query: 471 KIDDGTVRRDELLL 512
             D G  R+D  ++
Sbjct: 384 -ADSGIPRKDIFII 396


>SB_54717| Best HMM Match : Aldo_ket_red (HMM E-Value=0)
          Length = 333

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
 Frame = +3

Query: 240 DQGRRLNEAKLKGSVKEVATLKL-RDGTFMPVIALGTALLPPRLATEIVETAIDMGYRAI 416
           +Q R +   K +     +++ ++  DG  +P++ LG   +  + A   V  A++ GYR I
Sbjct: 47  NQNRTITPVKDEKEELSISSTRIMNDGRKIPLLGLGAHDIHSKQA---VLWALESGYRLI 103

Query: 417 DTAYIYGNEKLIGKAIK 467
           DTA  Y NE+ +G+A++
Sbjct: 104 DTASRYHNEQSVGEAVR 120


>SB_56309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +3

Query: 390 AIDMGYRAIDTAYIYGNEKLIGKAIK 467
           A+  GYR +DTA IY NEK +G A++
Sbjct: 53  ALKNGYRMLDTADIYQNEKEVGSAVR 78


>SB_2224| Best HMM Match : Extensin_2 (HMM E-Value=0.16)
          Length = 299

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = -3

Query: 289 SFTL-PFSLASFSLRPWSYIVHL 224
           SFT+ PF L SF++RP++  VHL
Sbjct: 38  SFTMRPFELRSFTMRPFASFVHL 60


>SB_21254| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = -3

Query: 289 SFTL-PFSLASFSLRPWSYIVHL 224
           SFT+ PF L SF++RP++  VHL
Sbjct: 38  SFTMRPFELRSFTMRPFASFVHL 60


>SB_15292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 983

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 659 RYRTVAFLQKTLDCG*GRGRKTPSPGLPVKSCRP 558
           +YR + F +   +CG GRG +  S  LP +SC P
Sbjct: 280 KYRCI-FPENDTECGGGRGFEEGSRLLPYESCHP 312


>SB_23344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -1

Query: 651 NCCLPSKDIGLWMRKRSKNSKPRSASEILQAVSTRSVRWNVLH 523
           +C +PS+ +G  + K  +  +P++  +ILQ        W  +H
Sbjct: 137 DCLVPSRSLGFLLNKLRRKHQPKNRYKILQQEIDGDAYWPPVH 179


>SB_14976| Best HMM Match : rve (HMM E-Value=1.3e-38)
          Length = 1172

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 538 MECTPQFTHNKSSSRLTVPSSILFLIAFPMSFSLP 434
           +EC   F  N +     VP+SIL+++  P++ S+P
Sbjct: 75  LECLKDFEFNIAVKPDAVPASILYIVYVPVARSVP 109


>SB_30758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = -1

Query: 225 CEVSRVSFLFAVVQTPTPASGR--LLHLDRSYL-PEHKEAQYEPDYLH 91
           C+  RV  L   +    P  G   L HL R  + P H+   Y+ DY+H
Sbjct: 322 CDYYRVKMLLEYLNRQEPGLGEATLRHLLRPRVDPPHEHPAYDYDYIH 369


>SB_52108| Best HMM Match : DUF1053 (HMM E-Value=6)
          Length = 349

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 506 ELVSPHGAVVNLVLDRFSYELFVAVNISGIYSSVAHI 396
           ELV+ H      VLD+F+ E FVA   + +  SVA +
Sbjct: 68  ELVTAHDDAQENVLDQFADEAFVASAFAAMGESVASV 104


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,638,778
Number of Sequences: 59808
Number of extensions: 405527
Number of successful extensions: 3464
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3462
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)